Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq450 100 2e-16 seq1 87.8 1e-12 >seq450 Length=28110227 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | ||| |||||| || | |||||||||||| Sbjct 3901533 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3901592 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| || |||| ||||| ||||| | || Sbjct 3901593 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901652 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | ||| ||||| | ||| || Sbjct 3901653 ATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3901712 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || |||||||| | ||| |||||||| || |||||||| Sbjct 3901713 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 >seq1 Length=23542271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | || ||||| || | ||||||||||| Sbjct 6282500 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGA 6282559 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| ||||| || || ||||| || ||||| ||||||||||| | || Sbjct 6282560 CAGAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGG 6282619 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || ||| |||| | || || | ||| | ||| | |||||| Sbjct 6282620 GATTCCCTCCTTGTCGTGGATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGCTCGAC 6282679 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || |||||||| || ||||| Sbjct 6282680 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360908348460