Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq448 298 7e-76 >seq448 Length=23513712 Score = 298 bits (330), Expect = 7e-76 Identities = 1200/1878 (64%), Gaps = 42/1878 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 ||||| || || |||||||||| | | || | || || || ||||||||||| || Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| ||||| |||| |||||||| || || || || |||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||||| | || || || | ||||||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 71030 CTTCTGGAAGGTTTGTATTCTGAATG-----GATCCACCATCTGCA----ATAATCCTAT 71080 |||| || ||| || ||| |||| |||| | | ||||| || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 71081 TTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAA 71140 | || || || || | ||| || | |||||||| | | | | |||| | || | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200 | || || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 || |||||||| |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 71261 GACTATTTCTAAGACCATGTGATCGGATTTTA-TCTTTTAGAGATTCCCAATTCCAAAGA 71319 || || | | ||| || ||| | | | || || | | ||| | ||| || Sbjct 10325716 GAGAGTTCCGGACACCGTGC-ATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10325774 Query 71320 TCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCC 71378 | || ||| || || || || || | || || Sbjct 10325775 TTCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCC 10325834 Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438 | | || || |||||||| ||||| | | ||| ||||| || || || || || || || Sbjct 10325835 T-CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCC 10325893 Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||| ||||| |||||||| |||| || ||| |||| | | |||| ||| || | Sbjct 10325894 ATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTC---GCTTTCGTA 10325950 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || || | |||||| || || || || ||||| |||| ||||| || | || | Sbjct 10325951 CGGGAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACG 10326010 Query 71556 GTGTCTCTTATTAGAAATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 ||| ||| ||| || |||| || ||||| | ||||||||| || ||||| || || Sbjct 10326011 GTGCCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATC 10326068 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || || |||||| || | || ||| || ||||| || || |||||| | || Sbjct 10326069 TTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTC 10326128 Query 71674 CCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 || ||||||||| ||| | ||||| || |||| || || || |||| |||| Sbjct 10326129 TTCTCCGGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCA 10326188 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | | ||| |||| || ||||| || || | || || |||||||| || || | | Sbjct 10326189 TCCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACA 10326248 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || || || || ||||| |||| || || ||||| | || || ||||| | || || Sbjct 10326249 TTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTC 10326308 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | || | || || || || ||| | | | ||||||| | | ||| Sbjct 10326309 TCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG-- 10326366 Query 71911 CTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 | | ||||| ||||||| || | |||||| || || ||||| | | || Sbjct 10326367 CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGT 10326426 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | |||||||| | | || ||||| | ||||| || || | | | || |||| Sbjct 10326427 GGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTT 10326486 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| |||||||| || ||||| || || ||| ||||| | | | || ||| || | Sbjct 10326487 TCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTT 10326546 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | ||||| ||||| || || || |||||| | | | ||| || ||||| ||||||| || Sbjct 10326547 TGCCTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGT 10326606 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | | || || || ||| ||||||||||| | || | || |||| Sbjct 10326607 AAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTAT 10326666 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | |||| |||| |||||||| | ||||| || | ||||| || ||| | || | Sbjct 10326667 TGAAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATG 10326726 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || | |||||||| | || || | | || || || || || || || ||||| Sbjct 10326727 TGCCCTTTGCACGAATGCAGTG-TACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGAT 10326784 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | ||||| | | | | | | |||||||| || || | ||||| | || Sbjct 10326785 CATGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAG 10326844 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || ||||| |||| || | || | || | || ||| | || || || || Sbjct 10326845 AAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGC 10326904 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||||| || | || || || ||||| || || || | || | || |||||| Sbjct 10326905 ATGCGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTC 10326964 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | ||| ||||| | ||| || ||||| | ||||||||| |||| || ||||||| Sbjct 10326965 TCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCC 10327024 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 ||| |||| | || ||||| |||| || || || ||||||||||| || ||| Sbjct 10327025 GTTTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAA 10327084 Query 72627 GTCTCGTTCGTAAATAAT 72644 ||| || || || || || Sbjct 10327085 GTCACGATCATAGATTAT 10327102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123512121200