Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq448 138 1e-27 seq450 100 3e-16 >seq448 Length=23513712 Score = 138 bits (152), Expect = 1e-27 Identities = 539/837 (64%), Gaps = 38/837 (5%) Strand=Plus/Plus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 ||||||||| | ||||| || | || ||| || | ||||| || || | |||| Sbjct 10325865 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTC 10325924 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 || ||| |||| | ||||| ||||||| | |||| | || || ||||| || || Sbjct 10325925 AAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAAT 10325984 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 156946 || ||||| |||||||| | |||||| || | || ||| ||||| |||| | | | Sbjct 10325985 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGCAGA 10326044 Query 156947 GGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTAC-ATGTT--TGACCACA 157003 || || | ||| |||||| || || || | | | | || || || |||| | Sbjct 10326045 GGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCC 10326104 Query 157004 GTGTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATC 157060 || || | |||||| ||| | || | | | | | | | |||| |||||| Sbjct 10326105 TTGAGC--TTCTTGAAA-TCATACGTCTTCTCCGGCGTTACAAACATGTTGAGGGCAATG 10326161 Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120 || || | || || || || | || || || ||| | |||| ||| ||||||| |||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180 || |||||||| || || || ||| || ||||| || | ||||||||||||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGC-------- 157232 ||| | | ||||||||| | ||||| || |||| || |||||| || Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATG--GCAAACCACA 10326339 Query 157233 -GCATTAA--TGTAACCG--CGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAATG 157287 | ||| | |||||| ||| || || || || ||| | | |||||| | Sbjct 10326340 GGGATTGAGCCTTAACCGTTCGG---TTGGCCCG----AC---CCTCT-TGCTCGTATTT 10326388 Query 157288 TTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGG 157347 | |||| | ||| || ||||| || || |||| ||| |||||||| || || Sbjct 10326389 CTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGG 10326448 Query 157348 ACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCA 157407 ||||| | ||||| |||||| | || ||||||||||| || | |||||| | ||| Sbjct 10326449 GCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCA 10326508 Query 157408 TAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTG 157467 | |||| | || ||| || || | ||||| |||| |||| || | Sbjct 10326509 CAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTC 10326568 Query 157468 TAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCG 157527 | | || | | || | ||||| ||||| | ||| | || ||| || || Sbjct 10326569 CAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACG 10326628 Query 157528 CTTGCCACCT---TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGG 157581 |||||| ||| |||||||| | ||| ||| |||||| ||||| | ||||||||| Sbjct 10326629 CTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGG 10326685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 10409885 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 10409826 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 10409825 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 10409766 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 10409765 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10409731 >seq450 Length=28110227 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || ||||| || || |||||||||||| | Sbjct 3899481 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 3899540 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899541 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3899599 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| ||| ||||| Sbjct 3899600 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTAC 3899659 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3899660 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3899708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901533 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3901592 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| || || Sbjct 3901593 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901652 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||||| ||| ||||| Sbjct 3901653 ATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3901712 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| || || || || || ||||| Sbjct 3901713 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 3901759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900849 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3900908 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || ||||| |||||||||| |||||||| || || Sbjct 3900909 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 3900967 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3900968 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3901027 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901028 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901305 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901364 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || ||||| |||||||||| |||||||| || || Sbjct 3901365 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 3901423 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||| || || | | || | ||||||| || ||||| Sbjct 3901424 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3901483 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901484 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901532 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3899709 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899768 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899769 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3899827 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3899828 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3899887 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3899888 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3899936 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3899937 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899996 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899997 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900055 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3900056 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3900115 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900116 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900165 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900224 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900225 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900283 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3900284 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3900343 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900344 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900393 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900452 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900453 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900511 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||| || || | | || | ||||||| || ||||| Sbjct 3900512 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3900571 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900572 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900621 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900680 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900681 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900739 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3900740 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3900799 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900800 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900848 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901077 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901136 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3901137 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3901195 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||||| Sbjct 3901196 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3901255 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901256 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002548538400