Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq449 302 7e-77 seq448 212 9e-50 seq1 188 1e-42 >seq449 Length=25286936 Score = 302 bits (334), Expect = 7e-77 Identities = 583/850 (69%), Gaps = 34/850 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC-GAT 125096 ||||| |||| || || ||||| ||||| ||||| ||| ||||||||||||| ||| ||| Sbjct 11984312 AGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTCCAAGGACCT-TACTGAT 11984254 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 ||| | || ||| || ||||| | || || |||||| | | |||||||| Sbjct 11984253 TGGCAC---CGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTTGCCTTCTTC 11984197 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| |||||| || ||||| ||||| || ||| || || ||| ||| ||| || Sbjct 11984196 GCCGCCTCCGACGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAG 11984137 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || | |||| ||||| ||||| || || ||| || ||||||||||||||||| Sbjct 11984136 ATCACGGAGGCACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG 11984077 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 |||||| | |||| |||| ||||| || ||||| || | | | || ||| Sbjct 11984076 ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTGTTT 11984017 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 ||||| ||||| ||| ||||| || || || ||||| | |||| | || Sbjct 11984016 AACGCTATCGAAACGATGCCGGCT----GTGAAGCGCAAGGCAGACTGGGCCCTGTCCTG 11983961 Query 125393 GATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||| | ||| || | | || || | | | || || |||||||| || Sbjct 11983960 GATC---TCCTCCAAATCGGCCAACTTCGGGGAACGCATCATCGCCTTTGCCGCCGTGGA 11983904 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||||||||| || || || || |||| || ||||| |||||||| || || || Sbjct 11983903 GGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATTTTCTGGCTTAAGAAGCGAGGTCTGAT 11983844 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| ||| |||| | |||||| |||| ||||| ||||||||| | ||||| ||||| Sbjct 11983843 GCCTGGATTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTT 11983784 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCC-AGCGATGAAAA 125626 |||| | || |||| |||| | ||| ||||| || || |||| || Sbjct 11983783 TGCCGTGCTGATGTT--CCAAC-ACCTG--------GTGCAGCGACCCAAGCG-CGAGCG 11983736 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||||| | || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 11983735 CATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCCT 11983676 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || |||| ||||||||||||| ||| | || |||| | ||||||| ||||| || || Sbjct 11983675 GCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGC 11983616 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 || ||| | || |||||| | | ||||| |||||| |||| || |||||| | Sbjct 11983615 GGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAAAACCCCTTTAA 11983556 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGA 125866 |||||| | ||||| || || || |||||||||||||| ||||||||||| | || Sbjct 11983555 CTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTTGAGAAGAAGGTGGGGGA 11983496 Query 125867 GTACAAACGC 125876 |||| | ||| Sbjct 11983495 GTACCAGCGC 11983486 >seq448 Length=23513712 Score = 212 bits (234), Expect = 9e-50 Identities = 938/1462 (64%), Gaps = 50/1462 (3%) Strand=Plus/Minus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGCGGCAATA 96888 || |||||||| || | | |||| ||||| |||| || || ||||| ||| | Sbjct 10326688 GTTCCAATGCTGAGGGTTTTCAAT--AATGTGGCACGTTATGTGGATCAGGGAGGCGGCA 10326631 Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948 | || || || || | ||| | ||| ||||||| |||||| |||| || ||||| || Sbjct 10326630 AGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCC 10326571 Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCAC 97008 | || || || ||| | ||| |||||| || || | || ||||||| || | Sbjct 10326570 TGGAACTGAAGAAGAACACAGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCC 10326511 Query 97009 TCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG---ACGGTGGCTACTGGAGCCTAA 97065 | ||| | || ||| | |||||||| ||||| | | |||||| | ||| || | Sbjct 10326510 TGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTG---ATTGGTCGCTCA 10326454 Query 97066 TGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGT 97125 |||||||| || || || ||||| ||| |||||||| || || || || Sbjct 10326453 TGTGCCCCCACAAGTGTCCTGGTCTCCACGACGTGTGGGGCGATGAATTCGAAAAGCTGT 10326394 Query 97126 ACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGA 97185 || | |||||||||||||| || | || || | || | | |||||| Sbjct 10326393 ACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGT 10326334 Query 97186 AGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCG 97245 |||||| | ||| || || ||||| |||| ||||||||| || | |||||| | Sbjct 10326333 TTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTGTTCAAGGACGCTT 10326274 Query 97246 TGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGG 97305 || | || |||||||| | | ||||||| |||||| || ||| |||| |||| Sbjct 10326273 GCAACAGGAAGAGCAACCAGCAGAATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGG 10326214 Query 97306 AAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATC 97365 |||| ||||| ||| || | ||||| |||| ||||| ||| |||| || | | Sbjct 10326213 AAATCGTAGAATACTCCGCACCGGATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCC 10326154 Query 97366 TGCCCAAGTTTGTAGAG--GGTAAAGT-GTTTAATCTCAACCTATTGGCAAAGACGGTGC 97422 | || ||||||| | || ||| || | || |||| | ||| || | | Sbjct 10326153 TCAACATGTTTGTAACGCCGGAGAAGACGTATGATTTCAAGAAGCT--CAAGGAAGTCAC 10326096 Query 97423 GTC--TGGTGACTAGGAATCTAAACAAGATTATCGACAATGCACTCT-ATCCCATTCCCT 97479 | || || | |||||||||||||| || || | | ||| | |||| | || Sbjct 10326095 CAAGATAGTTACCAAAAATCTAAACAAGATAATTGATA-TCAACTATTATCCTCTGCCAG 10326037 Query 97480 CGGCTGCCAAGTCAAACTTTAAGCACCGACCCATCGGTATAGGAGTGCAAGGCTACGCAG 97539 ||| || || || || | |||||| ||| | || || || | || || | ||| | Sbjct 10326036 AGGCAAGGAAATCCAATTTGAGGCACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTG 10325977 Query 97540 ACGCTCTGGCCATGATGGGTATAGCCTACGAGGACTCGATGCAG--------TTGAATCG 97591 | ||| || | ||| || | | ||||| | ||| | || ||||||| Sbjct 10325976 ATGCTTTGATTCTCATGCGTTTCCCGTACGA--AAGCGAAGAAGCCGGTCTCTTGAATCA 10325919 Query 97592 TGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAGAGTTGCCAACTGGCC-AGAG 97650 | || |||||||| || ||| ||| || || | || ||| |||||||| ||| Sbjct 10325918 GCAGATATTCGAAACGATTTACTATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGAC 10325859 Query 97651 TGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAGTCGTGGAGAGTTGCACTTCG 97710 | | || |||||| | ||| | || |||||| || ||| ||||| | || Sbjct 10325858 CGAA-GGTCCATACGAAACCTACGAGGGCAGCCCGGTAAGCAAGGGAATTTTGCAATACG 10325800 Query 97711 ACCGAT---ACTCGGTGCACAGCCAAAA-GTGTGACTGGTCATCGTTGCGCAAAGA---C 97763 || | || ||||| || | || ||| |||||| ||| || || | Sbjct 10325799 ACATGTGGGACAAGGTGC-CAACGAACCTGTGGGACTGGCAGAAATTG---AAGGAGTCC 10325744 Query 97764 ATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACT 97823 ||| | ||||| | | |||||| |||| || || || ||||||||||| | || Sbjct 10325743 ATTAGGATGCACGGTGTCCGGAACTCTCTGCTTGTTGCTCCCATGCCCACGGCATCTACA 10325684 Query 97824 TCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGA 97883 | || | | |||||| |||||| || || || | ||| ||||||| ||| | Sbjct 10325683 GCTCAGATAATGGGCAATAATGAATCCTTCGAGCCCTACACCACAAACATATACACCCGG 10325624 Query 97884 CGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG- 97942 || | ||| || || || || || |||| || ||| | || ||| | | || Sbjct 10325623 CGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTTGCGCGACCTA-ACCGA 10325565 Query 97943 GCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCA 98002 ||| | ||||| |||| |||||| | |||||| | || || || || || || Sbjct 10325564 GCTGGACTTGTGGGACGACGACATGAAGAACCAGATCATATCCAGCAGAGGATCGATCCA 10325505 Query 98003 AAACATT---ACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT 98059 ||||||| ||||| | ||| |||| ||||| | |||||||| || ||||| || Sbjct 10325504 AAACATTGAGACCAT-ACCCCCGAAGG--TGCGCGATCTGTACAAGACGGTGTGGGAAAT 10325448 Query 98060 TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCA 98119 || |||| | ||| | ||||| ||||| | |||| | ||| || |||||||| Sbjct 10325447 CTCGGTCAAGTCCACGATTAAAATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCA 10325388 Query 98120 ATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTA 98179 |||||||| | | || |||||||| | ||| | |||| || ||||| ||||| Sbjct 10325387 GTCGTTCAACATACATGTGGCCGAGCCAAACTATGGAAAGCTGACCTCCATACATTTTTA 10325328 Query 98180 CGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAA 98239 | ||||| || ||||| || || |||||||||||| | || ||| | || | || Sbjct 10325327 TTCCTGGAAAGCTGGTCTCAAAACCGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAA 10325268 Query 98240 TGCCATACCATTTACGGTGGAC 98261 |||||| | || || ||| || Sbjct 10325267 TGCCATTCAGTTCACCGTGAAC 10325246 Score = 161 bits (178), Expect = 1e-34 Identities = 319/464 (69%), Gaps = 16/464 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||||||||| |||||||| ||||| |||||||| | || | |||| | | Sbjct 2969168 GGGGATCTGGGGCCGGTGTACGGCTTCCAATGGAGGCATTTCGGGGCGCAGTACGGCACC 2969109 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| ||||| || |||| | || || ||| | || | || ||||| Sbjct 2969108 TGCGACGAC-GACTACAGCGGCAAGGGGATCGACCAGCTGC-GCCAGGTGATCGACACCA 2969051 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTT 70242 ||| || || || |||| | | ||| | |||| | |||||||| || | || Sbjct 2969050 TCAGGAATAACCCCTCAGACCGTCGCATCATCATGTCGGCTTGGAATCCACTGGACAT-- 2968993 Query 70243 GCACCAA-ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT---- 70297 | | || ||||| || || ||||| ||||| ||||| ||||||||| | ||| Sbjct 2968992 -CCCAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGC 2968934 Query 70298 --GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 || | | || ||| | || ||||| || || ||||||||||| || ||||||| Sbjct 2968933 GCGGTGAGCTTTCGTGCCAGCTATACCAGAGAAGCGCAGACATGGGCCTGGGCGTACCCT 2968874 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | ||||| || |||| | || | || ||||||||||| || | || || ||||| Sbjct 2968873 TCAACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGC 2968814 Query 70416 CGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCAT 70475 || ||| || || |||||||| |||||| | ||||| || | || ||| | ||||| Sbjct 2968813 CGGGCGACTTTGTTCACACCATGGGCGACACACACGTCTACCTGAACCACGTAGAGCCGC 2968754 Query 70476 TAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 | |||| |||||| || || ||| |||| |||||||||||| Sbjct 2968753 TGAAGGAGCAACTGGAGCGCACACCGCGACCCTTTCCCAAGCTG 2968710 >seq1 Length=23542271 Score = 188 bits (208), Expect = 1e-42 Identities = 387/571 (68%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || ||||| || ||||||| || ||||||||||| || |||||| Sbjct 5913834 TTGCGGAAGAAGATCACGCCGGCGCGCGGACCTCGCAGTGTCTTGTGCGTGGTGGTGGTC 5913893 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| | || || || || || | | | || | | |||||| | Sbjct 5913894 ACAATGTCGGCCCATTCGAACGGCGATGGTATCAATCCCGCGGCCACAATGCCCGCCACA 5913953 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | ||||| ||||| |||||| || | Sbjct 5913954 TGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCATCGCAAATCTGTCGGAAACGCGCA 5914013 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | ||||| |||| || ||||| | | || ||| Sbjct 5914014 TAGTCCAGCAGACGGGAGTAGCACGATATGCCAGCAATGATGATCTGCGGCCGGAAATTC 5914073 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || || ||| || | || | || |||| || || |||| || | ||| |||||| Sbjct 5914074 TTCGCCGCCTCCGCCAACTTATCGTAATCGATGATGCCCGTCTCCGGGTTCACTTTGTAC 5914133 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| ||||| || || | || ||| ||| ||| Sbjct 5914134 GGCATGCTCTCGAAGAAGATCGATGTGGCCGATATCTTCTTGGTGGGCGTGAAGAAACCG 5914193 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| ||| || || ||||||||||| || |||||||| | | |||| || | Sbjct 5914194 TGCGTCAAGTGACCGCCATCGGGCAGATCCAGGCCCATGATGCGATCGTGGGGCCGGCAG 5914253 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| || || | |||||| || || || || || || ||| || ||| Sbjct 5914254 ACGCCCGTGTAGACAGCCAGATTGGCCGGGGATCCGGAATAAGGCTGCACATTAACGCCC 5914313 Query 127570 CA-TTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 || ||| | |||| || |||||| |||| | | | || ||||| || ||||| || | Sbjct 5914314 CACTTCTCA-TCGTCCAGGTTGAACAGCTC-GCGTCCGCGTTGCTGGGCGAGCAGCTCTA 5914371 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTA 127658 |||| ||||| ||||||| ||||| ||||| Sbjct 5914372 TGCGGTCGATGTACTCGTTGCCACCGTAGTA 5914402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041877741200