Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq450 100 2e-16 seq1 89.7 4e-13 >seq450 Length=28110227 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||||||| || | | ||||||| Sbjct 3901551 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3901610 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | |||| ||| || || || ||||||||||| ||||| Sbjct 3901611 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 3901670 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || ||||| || | ||| ||||| || Sbjct 3901671 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTT 3901730 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||| ||| || ||||| || ||||| || || Sbjct 3901731 CCGGTCAAAGTCTTCACAAAGATCTGCATTTTGGA 3901765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||||||| || | | | || || Sbjct 3900867 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900926 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| ||| || || || |||||||| || ||||| Sbjct 3900927 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900986 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || | ||||| || | ||| ||||| || Sbjct 3900987 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3901046 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 3901047 CCGGTCAAAGTCTTCACGAAGATCTGCATA 3901076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||||||| || | | | || || Sbjct 3901323 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3901382 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | |||| ||| || || || || ||||| || || || | Sbjct 3901383 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3901442 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || ||||| || | || ||||| || | ||| ||||| || Sbjct 3901443 ATCTTGGCCTTCACATTCTCAATGGTGTC-CGATGGCTCTACCTCGAGGGTGATGGTCTT 3901501 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 3901502 TCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901532 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||||||| || | | | || || Sbjct 3899727 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3899786 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 3899787 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3899846 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || | ||||| || | ||| ||||| || Sbjct 3899847 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3899906 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 3899907 CCGGTCAAAGTCTTCACGAAGATCTGCATA 3899936 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||||||| || | | | || || Sbjct 3900183 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900242 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 3900243 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900302 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || | ||||| || | ||| ||||| || Sbjct 3900303 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3900362 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 3900363 CCGGTCAAAGTCTTCACGAAGATCTGCATA 3900392 >seq1 Length=23542271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || |||||||||||| ||| | | |||| || Sbjct 6282519 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCC 6282578 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 6282579 AACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATTCCCTCCTTGTCGTGG 6282638 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| ||| ||||| || || || ||||| ||||| || Sbjct 6282639 ATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 6282698 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || ||||| Sbjct 6282699 CCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 6278540 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 6278599 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 6278600 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6278659 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||||||| || || || || || ||||| || Sbjct 6278660 ATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 6278719 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || || || |||||||||||||| Sbjct 6278720 CCAGTGAGGGTCTTAACGAAAATTTGCATATT 6278751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170945709670