Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq448 159 8e-34 seq450 123 6e-23 >seq448 Length=23513712 Score = 159 bits (176), Expect = 8e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 10409933 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 10409874 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 10409873 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 10409814 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 10409813 GCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 10409754 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || || |||||||| |||| Sbjct 10409753 AGGGTCTTAACGAAGATCTGCATCTTGT 10409726 >seq450 Length=28110227 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || || || || | |||||||| ||||| || || Sbjct 3901563 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3901622 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || |||||||| || || || ||||| || || Sbjct 3901623 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTA 3901682 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || |||||||| || || || ||||| || || | || Sbjct 3901683 ACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTC 3901742 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 3901743 TTCACAAAGATCTGCATTTTG 3901763 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | || || || || || || ||| Sbjct 3901335 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCA 3901394 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3901395 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 3901454 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || |||||||| || || || ||||| || || | || Sbjct 3901455 ACATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTC 3901514 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3901515 TTCACGAAGATCTGCAT 3901531 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | || || || || || || || Sbjct 3900423 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTGCTTGCCG 3900482 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3900483 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 3900542 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || |||||||| || || || ||||| || || | || Sbjct 3900543 ACATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTC 3900602 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3900603 TTCACGAAGATCTGCAT 3900619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151370813213960