Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq448 118 9e-22 >seq448 Length=23513712 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACC-TCTT 5297 |||||| ||||||||||| | |||||||| |||||||| |||| || ||| || Sbjct 11011914 TCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATCAC 11011855 Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | ||| || | | || || ||||| || | ||| || || | ||| || | ||| | Sbjct 11011854 CAGTTGC-GGATAGAAGATACGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCA 11011796 Query 5358 CCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 |||| || || | | | || ||||| || || |||| |||||| || || || | Sbjct 11011795 CCTCGAAATCAACATCTGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAATCCT 11011736 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | || || |||||||| || || |||| || ||||| || ||||| ||||| | Sbjct 11011735 CGTCCACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGG 11011676 Query 5478 CTATGCGTCCGTAG 5491 ||| |||||||||| Sbjct 11011675 CTACGCGTCCGTAG 11011662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447739933834400