Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq448 131 1e-25 >seq448 Length=23513712 Score = 131 bits (144), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATC--GTTGTGGC 5639 |||||||| || | ||| || || |||||||| ||| ||||||||||| | || Sbjct 11011835 CGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCACCTCGAAATCAACATCTGAG 11011776 Query 5640 CGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGC 5699 || |||||||| || ||||| | |||||||| || || |||| | ||| || |||| Sbjct 11011775 TGA--TTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTCGTCCACCACACCGGCGC 11011718 Query 5700 CCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACC 5759 |||| || ||||||| ||| |||||||| ||||| || || || ||||| |||||| | | Sbjct 11011717 CCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGGCTACGCGTCCGTAGGAGC 11011658 Query 5760 CATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | || |||| ||| | ||||| || || Sbjct 11011657 CCTCCGGAACCTGCACTTGCAGATCGGT 11011630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430044598791440