Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq448 185 6e-42 >seq448 Length=23513712 Score = 185 bits (204), Expect = 6e-42 Identities = 402/597 (67%), Gaps = 25/597 (4%) Strand=Plus/Plus Query 25381 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGAT 25440 |||| |||||||||||| || | ||| || || ||||||||| |||||||| | Sbjct 2968709 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2968768 Query 25441 CCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAA 25500 |||||||||||| | ||| |||| ||||| ||||| || ||||| | || || || | Sbjct 2968769 TCAGGTAGACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2968828 Query 25501 CGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACC 25560 | | || ||||||| ||||| || ||| ||||||||| |||||||| || | | Sbjct 2968829 CATGGGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2968888 Query 25561 CCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG------TCGCTCACG 25614 ||||||| | | |||||||| ||||| ||||| ||||| || ||| ||| Sbjct 2968889 CCATGTCTGCGC-TTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACG 2968947 Query 25615 TAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTC 25674 |||||||| || | || |||||| || || || || | ||| || ||| Sbjct 2968948 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTC 2969007 Query 25675 CAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGATCCGCGGT 25730 || || ||| |||||||| | |||| ||||| | |||||| |||| | Sbjct 2969008 CAAGCCGACATGATGATGCGACGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACC--- 2969064 Query 25731 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTG 25789 | ||||||| || | |||| | || |||||| | | || || | ||||| | Sbjct 2969065 -TGGCGCAGCTGGTCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGC-CGTACTGCG 2969122 Query 25790 CTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATC----TTCCCTG 25845 | ||||||| |||||| ||||| ||||||||||| || || || ||| | ||| | Sbjct 2969123 CCCCGAAATGCCTCCATTGGAAGCCGTACACCGGCCCCAGATCCCCAACGGCTCGCCCCG 2969182 Query 25846 TGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACC 25905 || || ||| |||| |||| ||| |||||||| | || | |||||||| | || Sbjct 2969183 TG----AACCCCATCTTGTCCAGAAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACA 2969238 Query 25906 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 |||| | ||| |||| || || || |||||||||||||||||| Sbjct 2969239 TTCTTCGCCTGCAGCAGCTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCC 2969295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129848051510