Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq449 132 3e-26 seq1 84.2 1e-11 >seq449 Length=25286936 Score = 132 bits (146), Expect = 3e-26 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 13437951 AAAAAATCGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 13437892 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 13437891 GCTCTAACCAACTGAGCTAATGGGCCG 13437865 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 8158541 AAAAAATGAAGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 8158482 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||| |||||||||||||||||||| ||| Sbjct 8158481 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 8158451 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 13431863 AATAAAAAAT--ATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 13431806 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 13431805 GACGCTCTAACCAACTGAGCTAATGGGCC 13431777 Score = 120 bits (132), Expect = 2e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || ||||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 13432185 AATAAAAAAAAAATTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 13432126 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 13432125 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 13432093 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 19715652 ATAAAAAAAAAACATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 19715593 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 19715592 ACGCTCTAACCAACTGAGCTAATGGGCC 19715565 Score = 118 bits (130), Expect = 6e-22 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || || ||||| |||||| || | | ||||||||| |||||||||| |||||||||| Sbjct 13430257 TAAAGCATTAAAAAAAAAGGTCGACT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGC 13430315 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 13430316 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 13430355 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6166225 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6166166 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 6166165 CTGAGCTAATGGGCC 6166151 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 13431359 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 13431300 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 13431299 CTGAGCTAATGGGCC 13431285 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13431057 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13430998 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 13430997 TGAGCTAATGGGCC 13430984 >seq1 Length=23542271 Score = 84.2 bits (92), Expect = 1e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 21231343 GAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCAAATGGGTCG 21231400 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485240452120