Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq448 239 1e-57 >seq448 Length=23513712 Score = 239 bits (264), Expect = 1e-57 Identities = 1101/1730 (64%), Gaps = 39/1730 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||||||| | ||||| || || || || |||||| | |||| | ||| Sbjct 10327012 GAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGAT 10326953 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || | ||||| ||||| |||||| | || |||||||| || |||| ||| Sbjct 10326952 GCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATGCATCGCCCACA 10326893 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||| || || ||| |||| || || || ||||| | |||| Sbjct 10326892 CTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACA 10326833 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | ||| ||||||||||| || || | | | || | || || | || |||||| Sbjct 10326832 GCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAGCAGTGCGCCATGATCTCCAAGTCC 10326773 Query 363688 GCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || || || ||||| | | || | ||| |||||||| || || | ||| |||| Sbjct 10326772 GCCGGTGGCATTGGACTTAACG-TACACTGCATTCGTGCAAAGGGCACATCGATTTGCGG 10326714 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 |||| ||| ||||||||| ||||||| ||||| | || || | ||| || | Sbjct 10326713 CACAAATGGAACTTCGAATGGGTTGGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACG 10326654 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || || ||||| || || ||||| || || ||||| || || || || || Sbjct 10326653 TTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTG 10326594 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || | ||| | |||||||| || || || ||| ||||| || ||||| || || Sbjct 10326593 GCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACAGGCAAAGAAGAGAATCG 10326534 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 ||||| |||||||| || || || ||| | | || | || ||||| ||||||||||| Sbjct 10326533 CGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGC 10326474 Query 363987 ---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 ||| ||||||| ||| | ||||| ||| | ||||| ||||| ||| || || Sbjct 10326473 CAACGGT---GATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCCACGACGTGTG 10326417 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 ||| || || | | || ||||| || || || ||||| ||| || Sbjct 10326416 GGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAAC 10326357 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || || || |||||||||||||| || |||| | ||||| |||| || Sbjct 10326356 GGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCC 10326297 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| ||| ||| || | |||||| | ||| |||||||||| | | || ||||| Sbjct 10326296 GTACATGCTGTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTGGGCACAAT 10326237 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||||| | ||||| || || | |||||| |||| || || |||| || || Sbjct 10326236 CAAGTGCAGCAACTTGTGTACGGAAATCGTAGAATACTCCGCACCGGATGAGATAGCAGT 10326177 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA-----AAGATGGTACTTTTGAC 364338 || ||| | || || || || || |||||||| ||| | || | ||| Sbjct 10326176 CTGCAACTTGGCCTCCATTGCCCTCAACATGTTTGTAACGCCGGAGAAG--ACGTATGAT 10326119 Query 364339 CACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGAC 364398 | || | || | || || ||| | | ||| ||||| ||||| | || || Sbjct 10326118 TTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTAAACAAGATAATTGAT 10326059 Query 364399 AAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 | || |||||||| | || || || | || ||| || | || || || | || Sbjct 10326058 ATCAACTATTATCCTCTGCCAGAGGCAAGGAAATCCAATTTGAGGCACCGTCCCGTGGGC 10325999 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGCATTTGATTCG 364515 ||||| | ||||| ||||||| | || |||| |||| | | | | || Sbjct 10325998 ATTGGTATTCAGGGATTCGCTGATGCTT---TGATTCTCATGCGTTTCCCGTACGAAAGC 10325942 Query 364516 CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 || || || | | ||| || |||| || ||||| || || | || ||| || Sbjct 10325941 GAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACGATTTACTATGGCGCCTTGGAA 10325882 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 || || || |||| | ||| | || ||| || || ||||| ||| | Sbjct 10325881 GCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGAGGGCAGCCCGGTA 10325822 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCATCTGTCCGATGGAAC 364692 |||||| || || | || | ||| || || |||| | || ||| || Sbjct 10325821 AGCAAGGGAATTTTGCAATACGACATGTGGGACAAGGT---GCCAACGAACCTGTGGGAC 10325765 Query 364693 TGGGATACGCT-ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACA 364749 ||| | | | | | |||| ||| || ||| ||| || ||||| || || Sbjct 10325764 TGGCAGAAATTGAAGGAGTCCA---TTAGGATGCACGGTGTCCGGAACTCTCTGCTTGTT 10325708 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || |||||||||||||| ||||| || ||||| | || || || || | |||||| || Sbjct 10325707 GCTCCCATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAATCCTTCGAGCCC 10325648 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || | || | || | || || ||||| ||||| ||||| | ||| || || | Sbjct 10325647 TACACCACAAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCAT 10325588 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | | | || || |||| | | |||||| ||| |||||||||| | ||| Sbjct 10325587 CATTTGTTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGATC 10325528 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGAT-TTCCAGAAGATCTGAAGCCTA 364987 || || | || || | || |||||| | || || |||| || | Sbjct 10325527 ATATCCAGCAGAGGATCGATCCAAAACATTGAGACCATACCCCCGAAG--GTGCGCGATC 10325470 Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTC-ATTGATATGGCGGCCGATCGC 365046 | ||||| || || |||||||| || | | | | | ||| | ||||| |||||||| Sbjct 10325469 TGTACAAGACGGTGTGGGAAATCTCGGT-CAAGTCCACGATTAAAATGGCCGCCGATCGT 10325411 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 ||||| || || |||||| |||||||| ||| || || | |||||| || | Sbjct 10325410 GGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAACTATGGA 10325351 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| || ||||| ||||| || |||||| | ||||| || || || Sbjct 10325350 AAGCTGACCTCCATACATTTTTATTCCTGGAAAGCTGGTCTCAAAACCGG 10325301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303322372462340