Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq450 105 6e-18 seq448 86.0 5e-12 >seq450 Length=28110227 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || || || || ||||| | || ||| |||| || ||| | Sbjct 3901763 CAAAATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCC 3901704 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||| ||| | || || ||||| ||||| ||||| || || || || Sbjct 3901703 CTCGGACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGA 3901644 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || |||||||||||| ||||| | | | | | |||||| Sbjct 3901643 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTA 3901584 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || || || || |||| || || Sbjct 3901583 CAACATTCAGAAGGAGTCCACCCTTCACTTGGT 3901551 >seq448 Length=23513712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 10409791 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10409850 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 10409851 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10409910 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 10409911 ATTCAGAAGGAGTCCACTTTGCACTTGGTG 10409940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926201489850