Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq448 309 4e-79 >seq448 Length=23513712 Score = 309 bits (342), Expect = 4e-79 Identities = 1211/1889 (64%), Gaps = 40/1889 (2%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10325243 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10325302 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| ||||| |||| |||||||| || || || || ||| | || Sbjct 10325303 GGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCATAGTTTGG 10325362 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10325363 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10325422 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| || | | ||| | |||||||| | || || || | |||| | Sbjct 10325423 CATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCAC--- 10325479 Query 62079 CTTCTGGAAGGTTTGTATTCTGAATG-----GATCCACCATCTGCC----ATAATCCTAT 62129 |||| || ||| || ||| |||| |||| | | ||||| || ||| | Sbjct 10325480 CTTCGGG--GGTATGG--TCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTGGT 10325535 Query 62130 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 62189 |||| || || || | ||| || | |||||||| | | | | ||| | || | Sbjct 10325536 TCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10325595 Query 62190 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62249 | || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10325596 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCTCGA 10325655 Query 62250 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62309 || |||||||| |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10325656 AGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAAGCA 10325715 Query 62310 AACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGAT 62369 | || | | ||||| | || || || || | | ||| | ||| || | Sbjct 10325716 GAGAGTTCCGGACACCGTGCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10325775 Query 62370 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62428 || || || ||| | ||| || || || | | | ||| Sbjct 10325776 TCGTTGGCACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCCCT 10325835 Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62488 | || || |||||||| ||||| ||| || ||||| || || || || || || || Sbjct 10325836 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10325894 Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGCGCTTCCAGGCTATCAAATGG 62547 || ||||| |||||||| |||| || ||| | || | ||||| ||| || | || Sbjct 10325895 TAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10325953 Query 62548 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10325954 GAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTG 10326013 Query 62608 TCTCTTATTAGAGATTTCA--GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 ||| ||| || |||| || ||||| | ||||||||| || ||||| || || || Sbjct 10326014 CCTCAAATTGGA--TTTCCTTGCCTCTGGCAGAGGATAATAGTTGATATCAATTATCTTG 10326071 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 || |||||| || || || ||| || ||||| || || |||||| | || | Sbjct 10326072 TTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATA-CGTCT- 10326129 Query 62726 TCTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 ||| ||||||||||||| | |||| || |||| || || || |||| ||||| Sbjct 10326130 TCTCCGGCGTTACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCAT 10326189 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | | | |||| || || || || || | || || |||||||| || || | || Sbjct 10326190 CCGGTGCGGAGTATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACAT 10326249 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | || || || ||||| |||| || || ||||| | || ||| | ||| | || || | Sbjct 10326250 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCT 10326309 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 62960 | | || | || || || || ||| | | | ||||||| | | ||| | Sbjct 10326310 CCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--C 10326367 Query 62961 TCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 | ||||| |||||| |||| |||||| || || ||||| || | || Sbjct 10326368 CCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTG 10326427 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 || |||||||| | | || ||||| | |||||| || |||| ||| ||| ||||| Sbjct 10326428 GAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTT 10326487 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||| |||||||| || ||||| || || ||| ||||| | | | || || || || Sbjct 10326488 CATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTT 10326547 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 ||||| ||||| || || || |||||| | | | ||| || ||||| ||||||| ||| Sbjct 10326548 GCCTGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTA 10326607 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || || || ||| ||||||||||| | || | || ||||| Sbjct 10326608 AATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATT 10326667 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 |||| |||| |||||||| | ||||| || || ||||| || || | || | | Sbjct 10326668 GAAAACCCTCAGCATTGGAACCAACCCATTCGAAGTTCCATTTGTGCCGCAAATCGATGT 10326727 Query 63319 TCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 || | |||||||| | | || | | || || || || || || || ||||| Sbjct 10326728 GCCCTTTGCACGAATGCAGT-GTACGTTA-AGTCCAATGCCACCGGCGGACTTGGAGATC 10326785 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 | ||||| | | | | | | |||||||| || || | ||||| | || Sbjct 10326786 ATGGCGCACTGCTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGA 10326845 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 || ||||| |||| || | || | || | || ||| | || || || || Sbjct 10326846 AGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCA 10326905 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || || || | || || || ||||| || || || | || | || |||||| | Sbjct 10326906 TGCGTGAAGTAGCGCTCCGATAGAAGATTATAAGTTTCCACGGCCGCATCGATATCCTCT 10326965 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 ||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| | Sbjct 10326966 CCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCG 10327025 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 ||| |||| | || ||||| |||| || || || ||||||||||| || |||| Sbjct 10327026 TTTCTTTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATAGCCAAAG 10327085 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || || || || || |||||| || Sbjct 10327086 TCACGATCATAGATTATGGACGAGTTCAG 10327114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617188852000