Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq449 149 5e-31 seq450 127 2e-24 seq448 86.0 5e-12 >seq449 Length=25286936 Score = 149 bits (164), Expect = 5e-31 Identities = 169/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 51059 TGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCAT 51118 |||| || || |||| ||| |||||||| || |||||||| ||| || |||||||||| Sbjct 7827162 TGTCATGGACGCCGCCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCAT 7827103 Query 51119 CCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG-TCTGCACTAGGC 51177 ||| ||||| | ||||| || | || || || |||| || ||| || | | | Sbjct 7827102 CCAGACTGTACTTGTCGTTCAGCAGGATTGCGTACTCCAACGC-ATGCTCCGGTGTCGCT 7827044 Query 51178 GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCG 51237 |||||||||| ||| || ||||||||||||||||||| | ||||||||||| |||||| Sbjct 7827043 GTCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCG 7826984 Query 51238 CAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 | |||||| ||| ||||||||||||| ||||| | ||| Sbjct 7826983 CGTACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCATAAGT 7826940 Score = 149 bits (164), Expect = 5e-31 Identities = 169/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 51059 TGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCAT 51118 |||| || || |||| ||| |||||||| || |||||||| ||| || |||||||||| Sbjct 7830272 TGTCATGGACGCCGCCAATGGACCACATGCAGCCCACATAGCCGTTGGGGTCGCGACCAT 7830213 Query 51119 CCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATG-TCTGCACTAGGC 51177 ||| ||||| | ||||| || | || || || |||| || ||| || | | | Sbjct 7830212 CCAGACTGTACTTGTCGTTCAGCAGGATTGCGTACTCCAACGC-ATGCTCCGGTGTCGCT 7830154 Query 51178 GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCG 51237 |||||||||| ||| || ||||||||||||||||||| | ||||||||||| |||||| Sbjct 7830153 GTCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATCTTTCCCTCG 7830094 Query 51238 CAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 | |||||| ||| ||||||||||||| ||||| | ||| Sbjct 7830093 CGTACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCATAAGT 7830050 >seq450 Length=28110227 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3901760 AATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCCTC 3901701 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || || || Sbjct 3901700 GGACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 3901641 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 3901640 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3901581 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || || || Sbjct 3901580 CATTCAGAAGGAGTCCACCCTTCACTTGGTCCT 3901548 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3899707 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCCTCG 3899648 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3899647 GACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3899588 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3899587 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3899528 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||| || || || || ||||| | || | ||||||| Sbjct 3899527 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGAA 3899479 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3899935 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3899876 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3899875 GACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3899816 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3899815 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3899756 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3899755 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3899724 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3900163 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900104 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3900103 GACACAATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3900044 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3900043 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3899984 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3899983 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3899952 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3900391 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3900332 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3900331 GACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3900272 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3900271 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3900212 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3900211 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3900180 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3900847 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900788 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3900787 GACACAATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3900728 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3900727 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3900668 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3900667 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3900636 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3901075 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCTTCG 3901016 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3901015 GACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3900956 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| || ||||||||| Sbjct 3900955 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3900896 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || || || Sbjct 3900895 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCT 3900864 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3901303 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3901244 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || ||||| || || || Sbjct 3901243 GACACAATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 3901184 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3901183 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAAC 3901124 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3901123 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3901092 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3900619 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3900560 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || || || || || || || || Sbjct 3900559 GACACCATTGAGAATGTGAAGGCCAAGATTCA-GGATAAGGAGGGAATCCCCCCAGATCA 3900501 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | || |||| ||||| || ||||||||| Sbjct 3900500 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3900441 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3900440 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3900408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| || ||| | || Sbjct 3901531 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCATCG 3901472 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || || | ||| || || || || || || || || || Sbjct 3901471 GACACCATTGAGAATGTGAAGGCCAAGATTCA-GGATAAGGAGGGAATCCCCCCAGATCA 3901413 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | || |||| ||||| || ||||||||| Sbjct 3901412 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGATTACAA 3901353 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || Sbjct 3901352 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 3901320 >seq448 Length=23513712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 10409731 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10409790 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 10409791 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 10409846 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 10409847 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 10409906 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 10409907 TAACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 10409942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318124184050