Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq450 96.9 4e-15 >seq450 Length=28110227 Score = 96.9 bits (106), Expect = 4e-15 Identities = 221/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 127538 GGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCG 127597 ||| ||||||| || ||||||||||||||||| |||| | || || |||| |||| | Sbjct 11112797 GGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCC 11112738 Query 127598 GGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCAC 127657 || ||||||||||| || | ||| || || || ||| || ||||||| Sbjct 11112737 GGACCGCACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGTCAC 11112678 Query 127658 GTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAACATC 127717 | ||||| ||||||||| | || ||| | | || | | ||| | ||||||||| Sbjct 11112677 CTGGGCGATCTGGGCAACATTGA---GGCCACCGGCGACTGCCCCACCAAGGTCAACATC 11112621 Query 127718 ATCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTG 127777 | |||| | || | || | ||| | ||||| ||||||| | | | |||||| Sbjct 11112620 ACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCATCGGACGCACCGTTGTCGTG 11112561 Query 127778 CACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAAC 127837 ||| | ||| || ||||| |||| | | || | ||||||| | || |||||| Sbjct 11112560 CACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGAGCTGAGCAAGTCAACGGGCAAC 11112501 Query 127838 TCGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 | || | || | |||||||| | ||||| Sbjct 11112500 GCTGGTGCCCGCATCGGGTGCGGCGTTATTGG 11112469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537590633525200