Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq449 253 2e-62 seq451 125 8e-24 seq448 104 3e-17 >seq449 Length=25286936 Score = 253 bits (280), Expect = 2e-62 Identities = 554/824 (67%), Gaps = 8/824 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| ||||| || || || ||||| || || |||||||| |||| |||||| | | Sbjct 11983490 TGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCC 11983549 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | | | || || |||| ||| || |||| || || |||||| | || Sbjct 11983550 ATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 11983609 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | || ||||| || || |||||||| ||||||| || |||||||| || | | | Sbjct 11983610 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATTG 11983669 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 11983670 ACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 11983729 Query 93044 ATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAG 93100 || | | || |||| || || || | | | | |||| | ||||| ||||| Sbjct 11983730 ATGATGCGCTCGCGCTTGG--GTCGCTGCACCAGGTGTTGGAACATCA-GCACGGCAAAG 11983786 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| || || || ||||| || || || | ||| ||| ||| || || || || | | Sbjct 11983787 TCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCAGGCATC 11983846 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || ||||| ||||| ||||| || || ||||| || || || || || || || ||| Sbjct 11983847 AGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCC 11983906 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||||| ||||| || | || ||||| | || || || || || | |||||| Sbjct 11983907 ACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAGATCCAGGAC 11983966 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || ||| | | || | ||||||||||||||||| ||||| Sbjct 11983967 AGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTAAACAGGTAC 11984026 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 ||||||| || | ||| || ||||| || ||||| || | | ||||| || || || Sbjct 11984027 TCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGC 11984086 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 || |||||||| || || || || |||||||| || | || |||||||||||||| || Sbjct 11984087 ACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGCACCTCC 11984146 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 ||| || | ||| || || || || || || || || ||||| || || || || || Sbjct 11984147 TGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCA 11984206 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| || ||||| ||| || || || || | |||||| | || || Sbjct 11984207 AGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCAGTAAGGTCC 11984266 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || | ||| || || ||||||||||| || || || || || Sbjct 11984267 TTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGCCTCAGC 11984310 >seq451 Length=32079331 Score = 125 bits (138), Expect = 8e-24 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| Sbjct 24265256 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGA 24265315 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 24265316 GCGTGGGTTCGAACCCCACACCTGACAA 24265343 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 24112962 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 24113021 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 24113022 CGTGGGTTCGAACCCCACACCTGGCAAA 24113049 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 20604833 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 20604774 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 20604773 GTGGGTTCGAACCCCACACCTGGCAAA 20604747 >seq448 Length=23513712 Score = 104 bits (114), Expect = 3e-17 Identities = 80/93 (86%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 126258 TATTT-ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-- 126314 ||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct 15132398 TATTTCACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGA 15132339 Query 126315 TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||||||| |||||||||| || Sbjct 15132338 GAGAGAGCGTGGGTTCGAGTCCCACACCTGGCA 15132306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847783378800