Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-16 >seq1 Length=23542271 Score = 95.1 bits (104), Expect = 3e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| ||| |||||||| | |||| ||| || || |||||||||||||| || Sbjct 6999807 CCCATGGCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCCATCC 6999866 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | | | |||| || || ||| | || || |||| | |||||||| ||| Sbjct 6999867 GGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACATTGTCAACGAAAAG 6999926 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 6999927 ATCTACGTGTTCCTGTGGTTCTGGTTC 6999953 Score = 86.0 bits (94), Expect = 2e-13 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||||| || || || ||| | || |||| |||||||||| Sbjct 6974885 TGCACCTTCCACAAGTATGGTCCCTCTGGTTCGCTGCAGAAGCACGACTCACTCTGCATC 6974826 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||| | || |||||||||| ||| | ||| ||||||||||||||| Sbjct 6974825 CTGCCGCTGAACATTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCT 6974771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479744745000