Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq449 295 1e-74 seq448 277 3e-69 >seq449 Length=25286936 Score = 295 bits (326), Expect = 1e-74 Identities = 512/730 (70%), Gaps = 17/730 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||||||| | |||| Sbjct 11984208 CTTGCCTTCTTCGCCGCCTCCGACGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGT 11984149 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| | ||||| || |||||||||||||| ||||| ||||| |||||| Sbjct 11984148 CAGGAGGTGCAGATCACGGAGGCACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAAC 11984089 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 |||||||| ||| ||||| || || |||| ||||||| ||||| | |||| Sbjct 11984088 GTGCACTCGGAGATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGA 11984029 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGG 42660 | ||||| || || || || |||||||| ||| | ||| ||||| ||||||| Sbjct 11984028 GAGTACCTGTTTAACGCTATCGAAACGATGCCGGCTG--TGAAGCGCAAGGCAGACTGGG 11983971 Query 42661 CGCTCAACTGGATCGAGAGTCCCGA-CG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 | || ||||||| ||| | || |||| ||||| || | | | |||||| Sbjct 11983970 CCCTGTCCTGGATC--TCCTCCAAATCGGCCAAC-TTCGGGGAACGCATCATCGCCTTTG 11983914 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 ||||||| ||||||||||||||| ||| |||||| ||||| |||||||| ||| || Sbjct 11983913 CCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATTTTCTGGCTTAAGAAGC 11983854 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 |||| | |||||| ||| | |||||||| ||||| || ||| | |||||||| || Sbjct 11983853 GAGGTCT-GATGCCTGGATTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTG 11983795 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | ||||||||| || ||||| | | ||||| ||| ||| | ||| Sbjct 11983794 CACTGCGACTTTGCCGTGCTGATGTTC-CAA--CACCTGGTGCAGCGACCCAAGCGCGAG 11983738 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | |||||| || || |||| || ||| |||||||||| || | | Sbjct 11983737 CGCATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCC 11983678 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||||||| || | |||||||| |||||| |||| | ||||||| ||| ||| Sbjct 11983677 CTGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTA 11983618 Query 43017 GCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 || |||| | | || ||| || |||| | | |||||||||| |||||| Sbjct 11983617 GCGGACCGTTTGCTCGTG-GAGTTGGGCGTTGGAAAGATCTACAACACCAAAAACCCCTT 11983559 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 |||| ||||||| || ||| |||| || |||||||||||||| |||||| || | Sbjct 11983558 TAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTTGAGAAGAAGGTGGG 11983499 Query 43136 CGACTACCAG 43145 || |||||| Sbjct 11983498 GGAGTACCAG 11983489 >seq448 Length=23513712 Score = 277 bits (306), Expect = 3e-69 Identities = 941/1450 (65%), Gaps = 62/1450 (4%) Strand=Plus/Plus Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||| | || | || | || | |||||| | ||| |||||||| ||||| | Sbjct 10325249 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 10325307 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 |||| ||| ||||| | | || |||| |||||||| | ||| || |||| Sbjct 10325308 TGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTT-TCCAT----AG-TTTG 10325361 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | ||| || | | | ||||| ||||| ||||| || | ||| | | || | Sbjct 10325362 GCTCGGCCAC------ATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 10325415 Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| | || | ||| | ||||| || || || ||||||||| | | Sbjct 10325416 CGGCGGCCATTTTAATCGTGGACTTGACCGAGATTTCCCACAC--CGTCTTGTACA---G 10325470 Query 243973 CTTGAGGTGCTC--GGGGAACCCT-TCGATGTTCTGCACCGAGCCCTTG-TGGACGATGA 244028 | | | || |||| | | || ||||| || | ||| || || |||| |||| Sbjct 10325471 ATCGCGCACCTTCGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGAT-ATGA 10325529 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCG-ACCAGG 244084 |||| | ||||| |||| ||||| | ||| |||| || | | || | || Sbjct 10325530 TCTGGTTCTTCATGTCGTCGTCCCACAAGTCCA---GCTCGGTTAG-GTCGCGCAACAAA 10325585 Query 244085 TGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTG 244144 || ||| |||||||| || || || ||||| || || || ||| | ||| || || Sbjct 10325586 TGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTG 10325645 Query 244145 AGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGC 244204 ||||||| | || | ||||||| |||||| || || || || |||||||| Sbjct 10325646 TAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGA 10325705 Query 244205 GACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCC 244262 | || |||||| ||||| || |||||| || ||| || || | | | | || Sbjct 10325706 GCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATG--GACTCCTTCAATTTCTGCC 10325763 Query 244263 AGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCC 244322 ||||||||| | || | ||| | |||||||||| | |||| | | Sbjct 10325764 AGTCCCACAGGTTCGTTGGCACCTTGT---------CCCACATGTCGTATTGCAAAATTC 10325814 Query 244323 CCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC 244382 ||||||| || ||||||||||||||||| ||| ||||| ||| ||||||||| | | Sbjct 10325815 CCTTGCTTACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGC 10325874 Query 244383 AGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 |||| | || | |||| | ||||| || || ||||| ||| || |||| | | || Sbjct 10325875 AGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAGACCGG 10325934 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 | | ||| | | |||| | ||| | || || | || || | |||||| | | Sbjct 10325935 CTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAATCCCTGAATAC 10325994 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 | ||||| | ||| | ||| | | ||||| | | || || |||| || ||| ||| Sbjct 10325995 CAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGCAGAGGATAATAGT 10326054 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || || || | |||||| || || ||| | || | ||| || ||| || Sbjct 10326055 TGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCT 10326114 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 || || ||| | || ||||| | |||||| ||||||||| | Sbjct 10326115 TGAAATCATACGTCT-----TCTCCGGCGTT----------ACAAACATGTTGAGGGCAA 10326159 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 | ||||| ||||||||| || | ||| |||| || ||| | || || || || | Sbjct 10326160 TGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTAC 10326219 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | | ||| ||||||||||| ||||||| | ||| || ||| ||| |||||| |||| Sbjct 10326220 ACAAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10326279 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||| | |||||| | || |||||||| | || || | | || | ||| | Sbjct 10326280 CCTTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACA 10326339 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 || |||||| ||||| | | ||| |||||| |||||| |||||| Sbjct 10326340 GGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10326399 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 ||||| || |||||| || |||| || || || ||| ||||||||||| Sbjct 10326400 TTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 10326459 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| || ||| | ||| || | | ||||||||| ||||| ||||| ||||| | | Sbjct 10326460 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10326519 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | || || | | | | ||| || ||| ||||||||| |||| |||| || |||| Sbjct 10326520 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCAGGAACTCAA 10326579 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| || ||||||||| |||| ||| | || | ||| ||||| |||||| ||||| Sbjct 10326580 AGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 10326639 Query 245163 CCTGGTCCAC 245172 |||| ||||| Sbjct 10326640 CCTGATCCAC 10326649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944317126071200