Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq448 140 3e-28 >seq448 Length=23513712 Score = 140 bits (154), Expect = 3e-28 Identities = 304/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 |||||||| || || |||||| ||| ||| | || ||||||| || | |||| Sbjct 2968717 GGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAG 2968776 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||| | || |||| ||||||| ||| || || || | ||||| || ||||| ||| Sbjct 2968777 ACGTGTGTGTCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCA 2968836 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | || | |||| |||| ||| ||||| || || || |||| ||||||||| Sbjct 2968837 ATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCT 2968896 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG------TCAGCTACATAAAATTGA 20368 | ||||| || ||||| || |||||||||||| || | || ||||| || Sbjct 2968897 GCGCTTCTCTGGTATAGCTGGCACGAAAGCTCACCGCGCTTCTCGGAGACGTAAAACTGC 2968956 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 || |||| || ||||| || |||||| | | |||| || ||||| || || Sbjct 2968957 GCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGTGGATTCCAAGCCGAC 2969016 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || ||||| | | || || ||||| | || || | | | || ||| Sbjct 2969017 ATGATGATGCGACGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGG 2969076 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 || | ||||| ||| | ||||| | || | || | ||||| |||||| || ||||| Sbjct 2969077 TCGATCCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCT 2969135 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCC 20580 ||| ||||| ||||| || || |||| |||||| Sbjct 2969136 CCATTGGAAGCCGTACACCGGCCCCAGATCCCC 2969168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362482910800