Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq449 116 3e-21 seq1869 104 2e-17 seq1 104 2e-17 seq750 98.7 8e-16 seq687 98.7 8e-16 seq450 89.7 4e-13 seq448 86.0 5e-12 >seq449 Length=25286936 Score = 116 bits (128), Expect = 3e-21 Identities = 190/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | ||||| || |||||||| |||||||| | | |||||| Sbjct 7826953 TGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCTTTTTGCGCA 7827012 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957 |||| ||| ||| || ||| |||||||| | | || | | || | ||| | | || Sbjct 7827013 TGTACTGGGCCAAAAAGATTCTGGAATGGACAGC-GACAC-CGGAGCATGCGTTGGAGTA 7827070 Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017 ||| || || || || |||||||| |||| || || || |||||||| || || || Sbjct 7827071 CGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCTATGTGGG 7827130 Query 38018 CTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGG 38077 ||| ||||||| || |||| | || || | | |||| ||| | || | ||| Sbjct 7827131 CTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGG 7827190 Query 38078 CAAGATTCGGTACATGAACTACAACGGATG 38107 ||| || ||||||||||||| | ||||| Sbjct 7827191 TAAGGTTAGGTACATGAACTATCAGGGATG 7827220 Score = 116 bits (128), Expect = 3e-21 Identities = 190/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | ||||| || |||||||| |||||||| | | |||||| Sbjct 7830063 TGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCTTTTTGCGCA 7830122 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957 |||| ||| ||| || ||| |||||||| | | || | | || | ||| | | || Sbjct 7830123 TGTACTGGGCCAAAAAGATTCTGGAATGGACAGC-GACAC-CGGAGCATGCGTTGGAGTA 7830180 Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017 ||| || || || || |||||||| |||| || || || |||||||| || || || Sbjct 7830181 CGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCTATGTGGG 7830240 Query 38018 CTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGG 38077 ||| ||||||| || |||| | || || | | |||| ||| | || | ||| Sbjct 7830241 CTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGG 7830300 Query 38078 CAAGATTCGGTACATGAACTACAACGGATG 38107 ||| || ||||||||||||| | ||||| Sbjct 7830301 TAAGGTTAGGTACATGAACTATCAGGGATG 7830330 >seq1869 Length=76973 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 43655 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 43596 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 43595 ATAACTGATATAATGAGCCTTTTGCGGTTTC 43565 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 43655 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 43596 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 43595 ATAACTGATATAATGAGCCTTTTGCGGTTTC 43565 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 56136 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 56077 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 56076 ATAACTGATATAATGAGCCTTTTGCGGTTTC 56046 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 56136 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 56077 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 56076 ATAACTGATATAATGAGCCTTTTGCGGTTTC 56046 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 67839 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 67780 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 67779 ATAACTGATATAATGAGCCTTTTGCGGTTTC 67749 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 67839 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 67780 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 67779 ATAACTGATATAATGAGCCTTTTGCGGTTTC 67749 >seq1 Length=23542271 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 23432155 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 23432096 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 23432095 ATAACTGATATAATGAGCCTTTTGCGGTTTC 23432065 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 23432155 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 23432096 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 23432095 ATAACTGATATAATGAGCCTTTTGCGGTTTC 23432065 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 23211338 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 23211279 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 23211278 ATAACTGATATAATGAGCCTTTTGCGGTTTC 23211248 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 23211338 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 23211279 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 23211278 ATAACTGATATAATGAGCCTTTTGCGGTTTC 23211248 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 23456746 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 23456805 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| ||||| || | ||| || Sbjct 23456806 ATAACTGATATAATGAGCTTTTTGCGGTTTC 23456836 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 23456746 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 23456805 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| ||||| || | ||| || Sbjct 23456806 ATAACTGATATAATGAGCTTTTTGCGGTTTC 23456836 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||| Sbjct 23282760 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAAGAACC 23282819 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| ||||| || | ||| || Sbjct 23282820 ATAACTGATATAATGAGCTTTTTGCGGTTTC 23282850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||| Sbjct 23282760 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAAGAACC 23282819 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| ||||| || | ||| || Sbjct 23282820 ATAACTGATATAATGAGCTTTTTGCGGTTTC 23282850 >seq750 Length=2511 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 923 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 864 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 863 ATAACTGATATAATGAGCCTTTTGCGGTTTC 833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 923 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 864 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 863 ATAACTGATATAATGAGCCTTTTGCGGTTTC 833 >seq687 Length=1036 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||| | |||||||||||||||| | ||||||||||||| Sbjct 1005 CATGTATTAGCTCTAGAATTACCCCAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 946 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 945 ATAACTGATATAATGAGCCTTTTGCGGTTTC 915 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||| | |||||||||||||||| | ||||||||||||| Sbjct 1005 CATGTATTAGCTCTAGAATTACCCCAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 946 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 945 ATAACTGATATAATGAGCCTTTTGCGGTTTC 915 >seq450 Length=28110227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||||| ||| ||||||||||||||||||||| | || || Sbjct 3901542 AGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGT 3901601 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| |||| |||||||||||| || ||||| ||||||||||| Sbjct 3901602 CCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 3901645 >seq448 Length=23513712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| || ||||||| || || ||| |||||||||||||||| Sbjct 4228259 CAAT-GATACCACCACGCAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTG 4228201 Query 33952 TAATCTGCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || | || | || || | || |||| ||||||||||| || ||||| |||||||| Sbjct 4228200 TAGTCGGACAGAGTGCGGC-CATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 4228142 Query 34011 ATC 34013 ||| Sbjct 4228141 ATC 4228139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397053350699740