Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq448 170 2e-37 >seq448 Length=23513712 Score = 170 bits (188), Expect = 2e-37 Identities = 866/1371 (63%), Gaps = 51/1371 (4%) Strand=Plus/Minus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986 ||| ||| |||| ||||||||||| |||| | | |||||||||||| || ||||| Sbjct 10326869 GCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTT 10326810 Query 93987 CGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGT 94046 | | | || | || || | ||||| || | ||| || || || || | | || Sbjct 10326809 CAAGTCTGTGGAGCAGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTAACGT 10326750 Query 94047 CCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCT 94106 ||| | | ||||| | ||| | | || |||| || ||||| || || || || | Sbjct 10326749 ACACTGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGAACTTCGAATGGGTT 10326690 Query 94107 CGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAG 94166 || || ||||| |||| ||||| || | ||| || || ||||| ||||| || || | Sbjct 10326689 GGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACGTTATGTGGATCAGGGAGGCGGCAA 10326630 Query 94167 GAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCAT 94226 | | ||| | || || | || || || ||||||||| |||| || | ||| | Sbjct 10326629 GCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCT 10326570 Query 94227 CGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCT 94286 || ||| |||||| ||||| || | | | || | || || || ||||| || Sbjct 10326569 GGAACTGAAGAAGAACACAGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCT 10326510 Query 94287 CTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTG 94346 ||| | || || || || ||||||||||| ||| ||| | ||| || | || Sbjct 10326509 GTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTG 10326450 Query 94347 TCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGC 94406 ||| | | ||||| || || |||||| || || || ||| | |||| | Sbjct 10326449 CCCCCACAAGTGTCCTGGTCTCCACGACGTGTGGGGCGATGAATTCGAAAAGCTGTACGA 10326390 Query 94407 TCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGA 94463 ||||| |||| ||||| | | ||||| | ||| |||||| Sbjct 10326389 GAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGGTT 10326333 Query 94464 TCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGT 94523 | ||| | || | || |||||||| || | || ||||| ||||||||||| || Sbjct 10326332 TGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTGTTCAAGGACGCTTG 10326273 Query 94524 CAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGA 94583 |||| ||| |||||||||| | | || |||||| || || |||| || || Sbjct 10326272 CAACAGGAAGAGCAACCAGCAGAATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGA 10326213 Query 94584 GATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCT 94643 || || || || | | ||||| ||||| || || || ||| ||| |||||| ||| Sbjct 10326212 AATCGTAGAATACTCCGCACCGGATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCCT 10326153 Query 94644 GTCCACTTTCGT---GC--GAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAG 94698 || || || || |||| | |||| | ||| | || || Sbjct 10326152 CAACATGTTTGTAACGCCGGAGA-----AGACGTAT------------GATTTCAAGAAG 10326110 Query 94699 CTTGTGAACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAAC 94755 || | | || | | ||| || | || || |||| | |||| || | ||| Sbjct 10326109 CTCAAGGAAGTCAC---CAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAAC 10326053 Query 94756 TTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGC 94815 | || || | || ||||| ||| || || ||| ||| || ||| | ||||| || Sbjct 10326052 TATTATCCTCTGCCAGAGGCAAGGAAATCCAATTTGAGGCACCGTCCCGTGGGCATTGGT 10325993 Query 94816 GTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCG 94875 | ||||| ||||| || || || | | |||||| | || ||||| ||| | Sbjct 10325992 ATTCAGGGATTCGCTGATGCTTTGATTCTCATGCGTTTCCCGTACGA---AAGCGAAGAA 10325936 Query 94876 GCGGGT---TTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATC 94931 || ||| |||||| | | |||||||||| ||||| || || ||| | ||| | | | Sbjct 10325935 GCCGGTCTCTTGAATCAGCAGATATTCGAAACGATTTACTATGGCGCCTTGGAAGCCAGC 10325876 Query 94932 CGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGA 94991 | ||| | ||||| || | || ||| ||||| | | || || |||| | Sbjct 10325875 TGCGAACTGGCCCAGACCGAA----GGTCCATACGAAAC-CTACGAGGGCAGCCCGGTAA 10325821 Query 94992 AC-AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG- 95049 | |||| ||||| || | |||| | |||| | ||| || |||| |||||| Sbjct 10325820 GCAAGGGAATTTTGCAATACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGC 10325761 Query 95050 -GAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCC 95108 ||| | | | | | ||| | |||||||| ||| | |||||||| || || Sbjct 10325760 AGAAATTGAAGGAGTCCA--TTAGGATGCACGGTGTCCGGAACTCTCTGCTTGTTGCTCC 10325703 Query 95109 CATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCAC 95168 |||||||||||| || || || ||||| | ||||| || || || ||||| |||| ||| Sbjct 10325702 CATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAATCCTTCGAGCCCTACAC 10325643 Query 95169 CTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 | | ||| | |||| | |||| || || |||| ||||||| || ||||| | || | Sbjct 10325642 CACAAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTT 10325583 Query 95229 CCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || ||||| || |||| |||||| ||| | | |||||||| Sbjct 10325582 GTTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCA 10325532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711635845200