Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq450 95.1 9e-15 seq1 93.3 3e-14 >seq450 Length=28110227 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 3901551 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3901610 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | |||| |||||| || || ||||||||||||||||| Sbjct 3901611 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 3901670 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || || ||||| || | ||| ||||| || Sbjct 3901671 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTT 3901730 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || |||| ||| || ||||| || ||||| || || Sbjct 3901731 CCGGTCAAAGTCTTCACAAAGATCTGCATTTTGGA 3901765 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||||||| || | | | || || Sbjct 3900867 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900926 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | |||| |||||| || || |||||||| |||||||| Sbjct 3900927 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900986 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || || | ||||| || | ||| ||||| || Sbjct 3900987 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3901046 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || || || |||||| Sbjct 3901047 CCGGTCAAAGTCTTCACGAAGATCTGCATA 3901076 >seq1 Length=23542271 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||||||| Sbjct 6282499 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 6282558 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || || || || || ||| | |||||||||||||| || | Sbjct 6282559 ACAGAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 6282618 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || || || || |||| || ||||| || | Sbjct 6282619 GGATTCCCTCCTTGTCGTGGATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGCTCGA 6282678 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 6282679 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | || || || |||||||| || || || || |||||||| ||| Sbjct 6278064 TGCCACCACGCAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 6278123 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 6278124 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 6278183 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || |||||| || | Sbjct 6278184 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGA 6278243 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 6278244 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 6278292 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 6278520 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 6278579 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 6278580 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 6278639 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || |||||| || | Sbjct 6278640 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCAA 6278699 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || || || ||||| || || || || || || || |||||||||||||| Sbjct 6278700 CCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCATATT 6278751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383854812950