Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq448 311 8e-80 >seq448 Length=23513712 Score = 311 bits (344), Expect = 8e-80 Identities = 1165/1808 (64%), Gaps = 64/1808 (4%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| |||| || || || |||||||| |||||||| || || || | || ||| Sbjct 10327022 AAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 10326963 Query 122957 CGACATCGAAAACGCGACCG---AAACTTACGATTTGATGTCTCAAAAATTTTTCACGCA 123013 || ||||| ||| ||| ||||||| || | | || | | |||||||| Sbjct 10326962 GGATATCGAT---GCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCA 10326906 Query 123014 CGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTT 123073 || ||||| |||| ||||| | ||| || ||| |||||||| |||||||| | Sbjct 10326905 TGCATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCT 10326846 Query 123074 GCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTT 123133 || ||| || | ||| |||| || || | | || || | ||||| | Sbjct 10326845 TCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAGCAGTGCGCCAT 10326786 Query 123134 GATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAG 123193 ||| ||||| | | ||| ||||| || | ||||| ||| | | | | | | | Sbjct 10326785 GATCTCCAAGTCCGCCGGTGGCATTGGACTTAACGTACACTGCATTCGTG----CAAAGG 10326730 Query 123194 CCGCATCA----GAAGCACCGACGGAA--TCGCCTCCGGGCTCGAATCCATGCTGCGAGT 123247 | |||| | |||| | |||| ||| | ||| | | | |||||| | || Sbjct 10326729 GCACATCGATTTGCGGCACAAATGGAACTTCGAAT--GGGTTGGTTCCAATGCTGAGGGT 10326672 Query 123248 TTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGC 123304 || |||||| | | || | || || ||||| |||||| || || || | || Sbjct 10326671 TTTCAATAATGTGGCACGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGC 10326612 Query 123305 GATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACA 123363 || || || ||||| |||||| ||||| | || || | || | || | | |||| Sbjct 10326611 CATTTACCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACA 10326553 Query 123364 TGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGT 123423 || ||||| || || |||||| |||| ||||| | ||| |||||||| | | Sbjct 10326552 CAGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCT 10326493 Query 123424 TTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCG 123483 | ||| |||||| | | | |||| | |||||||||||||| ||| | |||||| | Sbjct 10326492 TCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTG 10326433 Query 123484 GCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAG 123543 | | |||||| | ||| || | || || || |||||| | ||||||||| || | Sbjct 10326432 GTCTCCACGACGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGG 10326373 Query 123544 G------CAAACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATC 123593 | ||| | ||||| ||| || | | ||| |||| || || Sbjct 10326372 GTCGGGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATCATT 10326323 Query 123594 GAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAA 123653 || | ||||| || ||||||| ||||||||||| | ||| ||||| ||||||||||| Sbjct 10326322 GAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTGTTCAAGGACGCTTGCAACAGGAAG 10326263 Query 123654 ACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAA 123713 | ||| ||| || |||| ||||| || || || || | || | ||||| | ||| Sbjct 10326262 AGCAACCAGCAGAATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGAAATCGTAGAA 10326203 Query 123714 TACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TC 123768 ||| || | ||| | | || || || || ||||| || ||| | | || | Sbjct 10326202 TACTCCGCACCGGATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCCTCAACATGTTT 10326143 Query 123769 GTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAG 123828 || || || | | | || | | ||||| | | |||||| | || || | || Sbjct 10326142 GTAACGCCGGAGAAGACG--TATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTA 10326085 Query 123829 TAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGT 123888 || ||| | ||||| || || ||| | || | ||||||| || || || | | Sbjct 10326084 CCAAAAATCTAAACAAGATAATTGATATCAACTATTATCCTCTGCCAGAGGCAAGGAAAT 10326025 Query 123889 CTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAA 123948 | ||||||| ||| | || || || | || ||||| || || || || || || | Sbjct 10326024 CCAATTTGAGGCACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCTTTGATTC 10325965 Query 123949 TGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT-AATACGCAAATAGCCGAA 124007 | |||| | |||||||||||||| ||||| || ||| ||| ||| ||| |||| Sbjct 10325964 TCATGCGTTTCCCGTACGAAAGCGAAGAAGCCG-GTCTCTTGAATCAGCAGATATTCGAA 10325906 Query 124008 ACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTAC 124067 || ||||| || ||||| ||||| || ||||||||||| || | | | || | ||| Sbjct 10325905 ACGATTTACTATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATAC 10325846 Query 124068 GAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCT 124127 |||| |||| ||||||||||| ||| || |||||||| |||||||||||| | Sbjct 10325845 GAAACCTACGAGGGCAGCCCGGTAAGCAAGGGAATTTTGCAATACGACATGTGGGACAAG 10325786 Query 124128 ACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTG 124187 || || || ||||||||||| || || | ||| || ||||||| | Sbjct 10325785 GTGCCAACGAACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAGGATGCACGGTGTC 10325726 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 || ||||| ||| | || || |||||| |||||| | || ||||| || | || || Sbjct 10325725 CGGAACTCTCTGCTTGTTGCTCCCATGCCCACGGCATCTACAGCTCAGATAATGGGCAAT 10325666 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 || |||||||||||||| | ||| | || | ||| || ||||| | ||||||| Sbjct 10325665 AATGAATCCTTCGAGCCCTACACCACAAACATATACACCCGGCGAGTTCTGTCCGGCGAA 10325606 Query 124308 TTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAA 124367 || || ||| | || ||||||||| || |||| | | | | | |||| || || Sbjct 10325605 TTCCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACCGAGCTGGACTTGTGGGACGAC 10325546 Query 124368 AACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCC 124426 ||||| ||| | || || | | | || | || | || ||| | | || || Sbjct 10325545 GACATGAAGAACCAGATCATATCCAGCAGAGG-ATCGATCCAAAACATTGAGACCATACC 10325487 Query 124427 GGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAA 124482 | || | |||||||| || ||||||||||| | || | ||||||| Sbjct 10325486 CCCGAAGGTGCGCGATCTGTACAAGACGGTGTGGGAAATCTCGGTCAAGTCCACGATTA- 10325428 Query 124483 TTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTG 124542 ||||||||| ||| || || |||| || ||||| ||||| || || ||| | || Sbjct 10325427 ---AAATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATG 10325371 Query 124543 TAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGA 124601 | || || || | ||| | ||||| |||||| | | | |||| ||| || Sbjct 10325370 TGGCCGAGCCAAACTATGGAAAGCTGACCTCCATACATTTTTATTCCTGGA-AAGCTGGT 10325312 Query 124602 CTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACC 124661 |||||||| || ||||| || | | ||||| || || || |||||||||| || ||| Sbjct 10325311 CTCAAAACCGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACC 10325252 Query 124662 GTCGACAA 124669 || |||| Sbjct 10325251 GTGAACAA 10325244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992634425200