Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq449 118 1e-21 seq448 104 3e-17 >seq449 Length=25286936 Score = 118 bits (130), Expect = 1e-21 Identities = 281/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288 ||| ||||| ||| |||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 11983492 GTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGC--GATATCATCTCC 11983549 Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || | ||| ||||| || | ||| | || || || || | || ||| | | Sbjct 11983550 ATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 11983609 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || |||| ||| |||||||||||| |||||| || | ||||| || || | || Sbjct 11983610 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATTG 11983669 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || | |||| ||| ||||||| |||| || || || | ||| || Sbjct 11983670 ACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 11983729 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTC 127527 || | | | | | || ||| | || || ||| | ||| ||||| || Sbjct 11983730 ATGAT-GCGCTCGCGCTTGGGTCGCTGCACCAGGTGTTGGAACATCAGCACGGCAAAGTC 11983788 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | |||||||| || ||||| || || || |||||| || || ||||| || Sbjct 11983789 GCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 11983848 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||| | ||||||||| | | || ||| ||||||||| |||||||| Sbjct 11983849 ACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 11983908 >seq448 Length=23513712 Score = 104 bits (114), Expect = 3e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| | || || ||||||||||| | ||||||||| ||||| || || Sbjct 19449826 ATCTTTGCCTCCCGACAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 19449885 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| | |||| | | | | |||| || || || || ||| | ||||| || || | Sbjct 19449886 GTTGGCACCCACAAAATTCTGAGCCAGATTCACGATTGTCATCTG-TAGGGATACCTCTC 19449944 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| || ||||| ||| | |||||||| | | | | ||| |||||||||| |||| Sbjct 19449945 CGTGGTGATAGGCTGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 19450004 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| ||| | | |||||| | |||| ||||| | ||| ||||| | ||| | Sbjct 19450005 GCTTGTCATTCCTCTTGAAGCAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 19450064 Query 176166 C 176166 | Sbjct 19450065 C 19450065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492859269200