Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq448 179 6e-40 seq449 176 7e-39 >seq448 Length=23513712 Score = 179 bits (198), Expect = 6e-40 Identities = 344/501 (69%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||||| ||| |||||||||||||| ||| | || ||| || | | |||||||| Sbjct 10325236 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGT 10325295 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || || || | ||| || | || ||||| | ||| || | Sbjct 10325296 ACATTCCGGTTTTGAGACCAGCTTTCCAGGAATAAAAATGTATGGAGGTCAGCTTTCCAT 10325355 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 ||| || ||||||| || ||||| | ||||| || || || ||||| | | |||| Sbjct 10325356 AGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 10325415 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||| || || ||| ||| ||| || ||||||||||||||| ||| || | Sbjct 10325416 CGGCGGCCATTTTAATCGTGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGC 10325475 Query 204072 TGGTGTGTTGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT 204129 | || || || || | | || | |||||| || || || || | ||| Sbjct 10325476 --GCACCTTCGGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGA-TCT 10325532 Query 204130 -CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || | || || |||||| | ||| | | | || || |||| || || ||| Sbjct 10325533 GGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGT 10325592 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| | ||| || || |||||||| || | |||||| | | ||| ||||| | || | Sbjct 10325593 TGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTGTAGGGCT 10325652 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 |||| | || || ||||| | |||||||| || ||||||||||||||||| | | Sbjct 10325653 CGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGAGCAACAA 10325712 Query 204309 GCAGGGAGTTGCGCACACCGT 204329 |||| ||||| || ||||||| Sbjct 10325713 GCAGAGAGTTCCGGACACCGT 10325733 >seq449 Length=25286936 Score = 176 bits (194), Expect = 7e-39 Identities = 529/803 (66%), Gaps = 28/803 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| |||||||||||||| || |||| ||||| |||||||| || Sbjct 11983501 CACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAA 11983560 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| || || ||| ||| || || | || | ||||| | ||| || || Sbjct 11983561 GGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTAC 11983620 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || || ||||| ||||| | || || || || || | || | ||||| || || Sbjct 11983621 GAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATTGACGGGCAGGGC 11983680 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || ||||||| |||||| | ||||| ||| | |||| ||| || || | Sbjct 11983681 ATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT-CGATGATGCGCT 11983739 Query 159882 CGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGTG 159939 || | || | || || | ||| | |||| || |||| ||||||||||||| Sbjct 11983740 CGCGCTTGGG-TCGCTGCACCAGGTGTTGG---AACATCAG-CACGGCAAAGTCGCAGTG 11983794 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || |||||||| |||||||| | ||||||||| | | | | || ||||| | || || Sbjct 11983795 CAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCTCG 11983854 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| ||||||| || || ||||| || ||||| ||||||||||| || Sbjct 11983855 CTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGC 11983914 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGGC 160116 ||| || | || | || || || ||| |||| | | |||| ||| Sbjct 11983915 AAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAG---GAGATCCAGGACAGGGC 11983971 Query 160117 CCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 ||| || ||| ||||| | || |||||| |||| |||||||||| | Sbjct 11983972 CCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTAAACAGGTACT 11984027 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 | ||| | ||| ||| ||| | |||| |||||| || | ||||| Sbjct 11984028 CTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCA 11984087 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCC 160291 | || || ||||| ||||||||| |||||| | |||||| ||| |||||||||| Sbjct 11984088 CGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTGAT-CTGCACCTCC 11984146 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || |||| | | |||| || | || || | ||||||| ||| || ||||| || Sbjct 11984147 TGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCA 11984206 Query 160352 AACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 | |||||| ||||||||||| | |||||| | || || | | ||| | || | | Sbjct 11984207 AGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTGCCAATCAGTAAGG 11984263 Query 160412 TCTTGGGCCAAATCAACCTCTTC 160434 || | || |||||| ||||| || Sbjct 11984264 TCCTTGGACAAATCCACCTCCTC 11984286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136613247200