Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq448 102 3e-16 seq1 102 3e-16 seq450 100 1e-15 >seq448 Length=23513712 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 10409731 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10409790 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 10409791 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10409850 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 10409851 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10409910 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 10409911 ATTCAGAAGGAGTCCACTTTGCACTTGGT 10409939 >seq1 Length=23542271 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || || ||||| || || || ||| | || ||||| |||| Sbjct 6278748 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 6278689 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| |||| || || || || ||||| ||||| || || ||||| Sbjct 6278688 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 6278629 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || || || || ||| | ||| || | || || || Sbjct 6278628 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 6278569 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6278568 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6278540 >seq450 Length=28110227 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||| || || || || || || || || || | || Sbjct 3901760 AATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTAGAGCCCTC 3901701 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | |||| || || ||||| |||||||||||||| || ||||| Sbjct 3901700 GGACACCATTGAGAATGTTAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 3901641 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 3901640 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3901581 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 3901580 CATTCAGAAGGAGTCCACCCTTCACTTGGT 3901551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975671063021960