Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq451 109 4e-18 seq450 93.3 3e-13 seq1 89.7 4e-12 >seq451 Length=32079331 Score = 109 bits (120), Expect = 4e-18 Identities = 183/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATTA 518510 || ||||||| ||||| || || || ||| || |||| || | | |||||| | Sbjct 15244634 AAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCATCATCGAACTTGCGACCAATCA 15244577 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 | || || || || || || || | ||| || || || || | || | ||||| |||| Sbjct 15244576 AGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCAT 15244517 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 |||| |||||| | || || || || || | |||||| |||||||| || |||||||| | Sbjct 15244516 CTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCT 15244457 Query 518631 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 518690 | || || || || || || || || |||| || | || || || || | || | Sbjct 15244456 GGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGAGTAGGTGG 15244397 Query 518691 TTCCTAAATCAATACCAATAGCA 518713 | || ||||||||||||| |||| Sbjct 15244396 TGCCCAAATCAATACCAACAGCA 15244374 >seq450 Length=28110227 Score = 93.3 bits (102), Expect = 3e-13 Identities = 271/416 (65%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 13977180 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAACGTTACCTCCACCTGGGGCACT 13977121 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||| ||||| || | | | ||| | ||||| | || |||||| Sbjct 13977120 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCTCGC 13977061 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || || |||||||| | |||||| || | | || || || | |||| Sbjct 13977060 GTCATCGCCCGCTCGCCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13977001 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || ||||| | | | || || || || || ||||| || | ||| | | ||| Sbjct 13977000 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGCGTAGTC 13976941 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | || || || || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 13976940 ATCACTCCGCCAGCAGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13976881 Query 517559 TTTTGAAGTTTTTCATCAGTTTGA---CCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | | | || | || | ||| || || || || || | ||||||||| Sbjct 13976880 TCCTGCA---CTGCCTCCGATTTATCGCCATGGAGGATGGCCGCCTGCACTGCAGCACCA 13976824 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 || ||||| || ||||| ||||| | | | ||||||| || || |||||||| Sbjct 13976823 TAGGCAACCGCCTCATCGGGATTGATGGACTTGTTTAGTTCCTTGCCGTTGAAAAA 13976768 >seq1 Length=23542271 Score = 89.7 bits (98), Expect = 4e-12 Identities = 221/333 (66%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| || || ||||||||||| | ||||| || || || || | ||| Sbjct 11803801 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11803860 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||| | || | | || || | ||||| ||| || || |||| ||| || | Sbjct 11803861 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11803920 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| || ||| ||| | | | || || || ||||| || |||| ||| |||||||| Sbjct 11803921 AAGCACGTTC--TTC-TCCCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11803977 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||||| || || || | || || | ||||| ||||| || ||||| || ||||| Sbjct 11803978 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATAACACCAGCATCCTTGGTGGC 11804037 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTT 518319 || | || | |||||| || || || || || |||| ||||||| || || | || Sbjct 11804038 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11804097 Query 518320 ACCAATATAAGCGCTTGCCGTTTGTTTCAtttt 518352 || | |||||| || |||| ||||| || Sbjct 11804098 GCCCAGATAAGCTTCAGCGGTTTCCTTCATCTT 11804130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780729604440220