Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq448 176 5e-39 >seq448 Length=23513712 Score = 176 bits (194), Expect = 5e-39 Identities = 641/989 (65%), Gaps = 21/989 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| || |||||||| || ||| |||||||||| |||| || || || || || Sbjct 10325631 TATATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGAT 10325690 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | | ||| ||| || | ||| | | | ||| ||| Sbjct 10325691 GCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATGGACTCC 10325750 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGA 106111 || | | |||||| | || || ||| |||||| ||||||| || |||| Sbjct 10325751 TTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTATTGC 10325807 Query 106112 AGCAC-CCCTTGGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | | |||||| || || | ||||| | || || || | ||||| || | | Sbjct 10325808 AAAATTCCCTTGCTTACCGGGCTG--CCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGG 10325865 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| ||| ||||| || |||| || | | || || ||||| || || | ||||| Sbjct 10325866 CCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCA 10325925 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 |||||| || || | | | | || | ||| || |||| |||| | Sbjct 10325926 AGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAATC 10325985 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG- 106348 | |||| ||| | || | || | ||| | || ||| || || | || ||| | Sbjct 10325986 CCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCC-TCTGGCAGA 10326044 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 |||||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| Sbjct 10326045 GGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCC 10326104 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 | || || | ||||| | || |||| | ||| || | ||||| || Sbjct 10326105 TTGAGCTTCTTGAAATCATACGTCT---TCTCCGGCGTTACAAACATGTTGAGGGCAATG 10326161 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || ||||| ||||| || || |||||||| | | ||| |||| ||||| |||||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||| | ||| || || |||| ||||| ||||| ||||| ||||||| || ||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-- 106646 ||| | |||||||| || | || |||||| || | || | || || ||||| Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10326341 Query 106647 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 106706 || | || || | ||||||||| ||||| |||||| || ||| || Sbjct 10326342 GATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCT 10326399 Query 106707 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 ||| || || || ||| | ||||| |||||| || ||||| || || | || | Sbjct 10326400 TTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCG 10326459 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 |||| | ||| |||| || || |||||||| || || || |||||||||| ||| Sbjct 10326460 ACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAA 10326519 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCC 106885 | ||||| | ||| |||||| | ||| ||| || | | || |||||||| Sbjct 10326520 ACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTT-CTTCTTCAGTTCCAGGAACTCA 10326578 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATA 106914 | || ||||| |||||| || || || || Sbjct 10326579 AAGACATCCGAGTGCCAGGGTTCCAGGTA 10326607 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 168489 CGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCG 168548 || |||||||||||||| | || ||||| || ||||||||||| | |||| | | Sbjct 19449845 CGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTTGTTGGCACCCACAAAATTC 19449904 Query 168549 TTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTG 168608 | |||| || || || || | || |||||| || || ||||| || || ||| | Sbjct 19449905 TGAGCCAGATTCACGATTGTCATCTGTAGGGATACCTCTCCGTGGTGATAGGCTGACATC 19449964 Query 168609 TCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAG 168668 ||||| || || | | || || |||||||||| ||| |||| |||| | | |||| Sbjct 19449965 TCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCACGCTTGTCATTCCTCTTGAAG 19450024 Query 168669 CAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAG 168728 |||| ||||||| |||| ||| ||||| | |||||| ||| | | ||| ||| Sbjct 19450025 CAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAG 19450084 Query 168729 CGCT 168732 |||| Sbjct 19450085 CGCT 19450088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967009198800