Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq450 165 2e-35 seq448 129 1e-24 seq1 107 4e-18 >seq450 Length=28110227 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || ||||| |||||||||| || || | ||||| || ||||| Sbjct 3900872 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3900931 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| || || |||||||| || || Sbjct 3900932 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 3900991 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3900992 AGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3901051 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3901052 CAAAGTCTTCACGAAGATCTGCAT 3901075 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||||| || || | ||||| || ||||| Sbjct 3899732 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3899791 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| || || |||||||| || || Sbjct 3899792 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 3899851 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3899852 AGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3899911 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3899912 CAAAGTCTTCACGAAGATCTGCAT 3899935 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||||| || || | ||||| || ||||| Sbjct 3900188 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3900247 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| || || |||||||| || || Sbjct 3900248 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 3900307 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3900308 AGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3900367 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3900368 CAAAGTCTTCACGAAGATCTGCAT 3900391 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || ||||| |||||||||| || || | || ||||| || || Sbjct 3901556 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTG 3901615 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| ||||| |||||||| || || Sbjct 3901616 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTT 3901675 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3901676 AGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3901735 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 |||||| || || || | ||||||| Sbjct 3901736 CAAAGTCTTCACAAAGATCTGCATTT 3901761 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || || || || |||||||||| || || | ||||| || ||||| Sbjct 3899504 GTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3899563 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||| || || |||||||| || || Sbjct 3899564 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 3899623 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3899624 AGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3899683 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3899684 CAAAGTCTTCACGAAGATCTGCAT 3899707 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||||| || || | ||||| || ||||| Sbjct 3900416 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3900475 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| || || || || || || ||||| || Sbjct 3900476 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTT 3900535 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3900536 GGCCTTCACATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3900595 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3900596 CAAAGTCTTCACGAAGATCTGCAT 3900619 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||||| || || | ||||| || ||||| Sbjct 3901328 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCAAGCTG 3901387 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| || || || || || || ||||| || Sbjct 3901388 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTT 3901447 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||||||||| || || || ||||| | |||||||| || Sbjct 3901448 GGCCTTCACATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTTCCGGT 3901507 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3901508 CAAAGTCTTCACGAAGATCTGCAT 3901531 >seq448 Length=23513712 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 10409934 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 10409875 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 10409874 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 10409815 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || || ||||| ||| || ||||| || | ||||| || || Sbjct 10409814 GGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 10409755 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 10409754 GAGGGTCTTAACGAAGATCTGCAT 10409731 >seq1 Length=23542271 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| ||||| | || || |||||||| Sbjct 6277177 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCGAGCTG 6277236 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || || || ||||| || || || || ||||| || || || Sbjct 6277237 CTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 6277296 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || || || || | ||| | ||||| || || Sbjct 6277297 GGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 6277356 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 6277357 GAGGGTCTTAACGAAGATCTGCAT 6277380 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || || || ||||| |||| ||||| | || || || ||||| Sbjct 6277633 GTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTG 6277692 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || || || ||||| || || || || ||||| || || || Sbjct 6277693 CTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 6277752 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || || || || | ||| | ||||| || || Sbjct 6277753 GGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 6277812 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 6277813 GAGGGTCTTAACGAAGATCTGCAT 6277836 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| ||||| | || || || ||||| Sbjct 6278545 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 6278604 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 6278605 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 6278664 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || || || || | || | ||||| || || Sbjct 6278665 GGCCTTAACGTTCTCAATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGT 6278724 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 6278725 GAGGGTCTTAACGAAAATTTGCAT 6278748 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| ||||| | || || || ||||| Sbjct 6278317 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 6278376 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 6278377 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 6278436 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGA 195083 | ||| |||||||||||||| || || Sbjct 6278437 TGCCTTAACGTTCTCAATGGTATCGGA 6278463 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||| || || || ||||| |||| ||||| | || || Sbjct 6277396 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 6277455 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || ||||| || | || || || ||||| || || || || ||||| Sbjct 6277456 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6277515 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || || || || || | || | || Sbjct 6277516 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGT 6277575 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || ||||| | ||||| Sbjct 6277576 CTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6277608 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||| || || || ||||| |||| | ||| | || || Sbjct 6277852 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCGTC 6277911 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || ||||| || | || || || ||||| || || || || ||||| Sbjct 6277912 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6277971 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || || || || || | ||| | || Sbjct 6277972 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGT 6278031 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || ||||| | ||||| Sbjct 6278032 CTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6278064 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||| || || || ||||| |||| ||||| | || || Sbjct 6278080 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 6278139 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || ||||| || | || || || ||||| || || || || ||||| Sbjct 6278140 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6278199 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || || || || || | ||| | || Sbjct 6278200 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGT 6278259 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || || || | ||||| Sbjct 6278260 CTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 6278292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109455017514290