Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq450 111 1e-19 seq448 107 1e-18 seq1 105 4e-18 >seq450 Length=28110227 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||| ||||| || || || ||| | ||| |||| || Sbjct 3899499 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3899558 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 3899559 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3899618 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || ||| || |||| ||| ||||| | Sbjct 3899619 ATCTTAGCCTTAAC--ATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCT 3899676 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | ||||||||| |||||||||||| Sbjct 3899677 TTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3899708 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| || || || ||| | ||| | || ||| Sbjct 3901551 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3901610 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||| ||| | || | || |||||||| Sbjct 3901611 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 3901670 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || ||| || |||| ||| ||||| | Sbjct 3901671 ATCTTAGCCTTAAC--ATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATGGTCT 3901728 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || | ||||||||||||||||||||| || Sbjct 3901729 TTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || || ||| | ||| |||| || Sbjct 3900411 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900470 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | |||||||| || | Sbjct 3900471 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3900530 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | ||| || |||| ||| ||||| | Sbjct 3900531 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCT 3900588 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | ||||||||| |||||||||||| Sbjct 3900589 TTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900620 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || || ||| | ||| |||| || Sbjct 3901323 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3901382 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | |||||||| || | Sbjct 3901383 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3901442 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | ||| || |||| ||| ||||| | Sbjct 3901443 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCT 3901500 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | ||||||||| |||||||||||| Sbjct 3901501 TTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901532 >seq448 Length=23513712 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 10409939 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 10409880 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 10409879 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 10409820 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || | ||| || || || | || ||||| || Sbjct 10409819 ATCTTGGCTTTGACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 10409761 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 10409760 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10409728 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||| ||||| || || | || |||| ||| Sbjct 4228233 ACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4228174 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 4228173 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4228114 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| | ||| || || | ||| ||||| | Sbjct 4228113 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCT 4228056 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||| || ||||| |||||||||||| Sbjct 4228055 TGCCGGTGAGGGTTTTCACGAAGATCTGCATA 4228024 >seq1 Length=23542271 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| | || |||||||| |||||||| || Sbjct 6282309 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAA 6282368 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG--- 34907 || | || || || ||| | || | || ||||||||| ||| | ||||||| Sbjct 6282369 ATCAAACGCTGATGATCTGGGGGGATTCCATCCTTGTCGTGGATCCTGGCTTTGACGTGT 6282428 Query 34908 --GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 |||| ||||| | | |||||| || | ||| ||||| || || ||||| |||| Sbjct 6282429 TTGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCT 6282483 Query 34966 TCACAAAGATCTGCAT 34981 |||||||||||||||| Sbjct 6282484 TCACAAAGATCTGCAT 6282499 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||| ||||| ||||| || || | ||| | || Sbjct 6278080 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 6278139 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6278140 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6278199 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | || | || | ||| || || | ||| ||||| Sbjct 6278200 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGT 6278259 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||| |||||||||||||| Sbjct 6278260 CTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 6278292 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 6278312 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 6278371 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6278372 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6278431 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || || | || ||||| || Sbjct 6278432 ATCTTTGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTG 6278491 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||||||||||||||| Sbjct 6278492 CCAGTGAGGGTCTTCACAAAGATCTGCAT 6278520 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||| ||||| || || || || | ||| | || ||| Sbjct 6282519 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCC 6282578 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| |||||||| || || | || || || ||| | || | |||||||||||| Sbjct 6282579 AACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATTCCCTCCTTGTCGTGG 6282638 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||| | || ||| ||||||||| | | ||| || || | ||| |||| Sbjct 6282639 ATCCTGGCCTTAACGTTTTCAATGCTATCGGAT-----GGCTCGACCTCCAAGGTGATGG 6282693 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||||||||||||||| Sbjct 6282694 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 6277628 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 6277687 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6277688 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6277747 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || || | ||| ||||| || Sbjct 6277748 ATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 6277807 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 6277808 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6277836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||| ||||| ||||| || || | ||| | || Sbjct 6277396 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTC 6277455 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6277456 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6277515 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | || | || | ||| || || | || ||||| Sbjct 6277516 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGT 6277575 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||| || ||||||||||| Sbjct 6277576 CTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6277608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||| ||||| ||||| || | | ||| | || Sbjct 6277852 CAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCGTC 6277911 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6277912 CTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 6277971 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | || | || | ||| || || | ||| ||||| Sbjct 6277972 CTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGT 6278031 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||| || ||||||||||| Sbjct 6278032 CTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6278064 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || || | ||| | || || Sbjct 6277172 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCG 6277231 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6277232 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6277291 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || || | ||| ||||| || Sbjct 6277292 ATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 6277351 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 6277352 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6277380 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 6278540 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 6278599 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 6278600 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6278659 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | |||||| || | || ||||| || Sbjct 6278660 ATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 6278719 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| ||||| || || || |||||||| Sbjct 6278720 CCAGTGAGGGTCTTAACGAAAATTTGCATATT 6278751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626201397360