Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq449 120 3e-22 >seq449 Length=25286936 Score = 120 bits (132), Expect = 3e-22 Identities = 515/806 (64%), Gaps = 6/806 (1%) Strand=Plus/Plus Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATT 18749 || ||||| || || || ||||| || | ||||| ||| ||||| || | ||| || || Sbjct 11983508 TTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATAT-CATCTCCATGAAGTTAAAGGGGTT 11983566 Query 18750 TTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTT 18809 ||| || || || ||| | || || || | || | | |||||||| || | Sbjct 11983567 TTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTACGAACTC 11983626 Query 18810 AATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGT 18869 ||| || | ||||| || |||||||| || || || || || || || ||||| || Sbjct 11983627 AATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATTGACGGGCAGGGCATCGGT 11983686 Query 18870 AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATT 18929 ||| || || || || || || || || || || | | | || || Sbjct 11983687 AAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCGCTT 11983746 Query 18930 AGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTC 18989 || | | | || |||| ||||||| ||||| || || || | |||||||| Sbjct 11983747 GGGTCGCTGCACCAGGTGTTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTC 11983806 Query 18990 TCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCA 19049 | | || | || || || || || || ||||||||||| |||| || || | ||| Sbjct 11983807 GCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCTCGCTTCTTAAGCCA 11983866 Query 19050 GAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAG 19109 ||| || ||||| || || ||||| || || || || || ||||| || | | Sbjct 11983867 GAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATGAT 11983926 Query 19110 TCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCT 19168 | ||| || || | | ||| | || ||||| ||| ||||| || ||||| Sbjct 11983927 GCGTTC-CCCGAAGTTGGCCGATTTGGAGGAGATCCAGGACAGGGCCCAGTCTGCCTTGC 11983985 Query 19169 TTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTT 19228 || ||| ||||| || || |||| ||||| || ||| |||| | || ||| Sbjct 11983986 GCTTCACAGCCGGCATCGTTTCGATAGCGTTAAACAGGTACTCTCGCTGGTGTGGATCAC 11984045 Query 19229 TAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCT 19288 | || | || ||||| | ||||||||| || || || | || || || || |||| Sbjct 11984046 GGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCT 11984105 Query 19289 GAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCA 19348 |||| ||||| || || | ||| || || ||||| || || || || | || |||| Sbjct 11984106 GAAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCACCA 11984165 Query 19349 AATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT 19408 || || || || || || || || || || || || | || || || |||| Sbjct 11984166 GGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGCACGTGCGAGATGAAAT 11984225 Query 19409 GTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCT 19467 | || || | || | | | ||||||| ||| || || || ||||| || || Sbjct 11984226 GGCGCTCGTC-GTCCTTCAGGCGGTGCCAATCAGTAAGGTCCTTGGACAAATCCACCTCC 11984284 Query 19468 TCAACTGTCCAAAAAGAAGCCTCTGC 19493 || || ||||| ||||||||||| || Sbjct 11984285 TCGACAGTCCAGAAAGAAGCCTCAGC 11984310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095660706800