Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq451 91.5 1e-12 seq450 91.5 1e-12 >seq451 Length=32079331 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 ||||||||||| || || || ||||| || || || ||||| || || || ||||| ||| Sbjct 12467149 ACGGATGCAGTCATCACAGTTCCAGCTTACTTCAACGACTCTCAGCGCCAGGCTACCAAA 12467090 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || || | || || || || ||||| || || || |||||||| || || || || Sbjct 12467089 GACGCCGGTCACATCGCCGGCCTGAATGTGCTCCGCATCATCAATGAGCCCACGGCGGCA 12467030 Query 550514 GCACTTGCATATGGACTTGATAA 550536 ||| | || || ||||| || || Sbjct 12467029 GCATTGGCCTACGGACTGGACAA 12467007 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 ||||||||||| || || || ||||| || || || ||||| || || || ||||| ||| Sbjct 12503160 ACGGATGCAGTCATCACAGTTCCAGCTTACTTCAACGACTCTCAGCGCCAGGCTACCAAA 12503219 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || || | || || || || ||||| || || || |||||||| || || || || Sbjct 12503220 GACGCCGGTCACATCGCCGGCCTGAATGTGCTCCGCATCATCAATGAGCCCACGGCGGCA 12503279 Query 550514 GCACTTGCATATGGACTTGATAA 550536 ||| | || || ||||| || || Sbjct 12503280 GCATTGGCCTACGGACTGGACAA 12503302 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 ||||||||||| || || || ||||| || || || ||||| || || || ||||| ||| Sbjct 12506443 ACGGATGCAGTCATCACAGTTCCAGCTTACTTCAACGACTCTCAGCGCCAGGCTACCAAA 12506502 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || || | || || || || ||||| || || || |||||||| || || || || Sbjct 12506503 GACGCCGGTCACATCGCCGGCCTGAATGTGCTCCGCATCATCAATGAGCCCACGGCGGCA 12506562 Query 550514 GCACTTGCATATGGACTTGATAA 550536 ||| | || || ||||| || || Sbjct 12506563 GCATTGGCCTACGGACTGGACAA 12506585 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 ||||||||||| || || || ||||| || || || ||||| || || || ||||| ||| Sbjct 12509726 ACGGATGCAGTCATCACAGTTCCAGCTTACTTCAACGACTCTCAGCGCCAGGCTACCAAA 12509785 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || || | || || || || ||||| || || || |||||||| || || || || Sbjct 12509786 GACGCCGGTCACATCGCCGGCCTGAATGTGCTCCGCATCATCAATGAGCCCACGGCGGCA 12509845 Query 550514 GCACTTGCATATGGACTTGATAA 550536 ||| | || || ||||| || || Sbjct 12509846 GCATTGGCCTACGGACTGGACAA 12509868 >seq450 Length=28110227 Score = 91.5 bits (100), Expect = 1e-12 Identities = 184/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| || || ||||||||||||||||| ||||| | | ||| |||| || ||| Sbjct 22290514 GTTTTTGACTGTTGGTTTGAATCAGGTTCAATGCCGTTCGCACAACAGCATTTCCCTTTT 22290573 Query 368854 GATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCA 368913 || |||| ||| ||||| |||| || || |||||| ||| || |||| Sbjct 22290574 GAAAACGAAAAGGACTTT----ATGAACAA--TTTCCCGGCTGACTTTATAGCAGAGGGT 22290627 Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 || ||||| || || || |||||||| || || | || | || || || | || || Sbjct 22290628 ATCGATCAGACCCGAGGCTGGTTTTACACACTCCTTGTGATTTCGACGGCGCTATTTAAT 22290687 Query 368974 AAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAG 369033 || | | |||||||| | || | || ||| | || || ||||||||||||| Sbjct 22290688 AAGGCACCATTTAAAAACCTCATTGCAAGTGGACTGGTCTTAGCTGCTGATGGTCAAAAA 22290747 Query 369034 ATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||||| || | ||| || ||| ||||||| Sbjct 22290748 ATGTCGAAGCGCAAGAAGAACTATCCCGATCC 22290779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029197105966300