Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq448 262 3e-65 >seq448 Length=23513712 Score = 262 bits (290), Expect = 3e-65 Identities = 434/624 (70%), Gaps = 8/624 (1%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || || |||| |||||||||||| || Sbjct 2968675 AAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTG 2968734 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| || || ||||||||| || ||||| | |||||||||||| | ||| |||| | Sbjct 2968735 CGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTGTCGCCCATG 2968794 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| || ||||| | || || || || || || ||||||| ||||| || Sbjct 2968795 GTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGG 2968854 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | ||| ||||||||| |||||||| || || |||||||| | |||||||| ||| Sbjct 2968855 GCATAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCTGCGCTTCTCTGGTATAGC 2968914 Query 29965 TGACACGAGAGCTCTCCG------TCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018 || ||||| ||||| ||| ||| ||||||||||| || | ||||||||| Sbjct 2968915 TGGCACGAAAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGC 2968974 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || || ||||| | ||| || ||||| || ||| ||||||||| | |||| Sbjct 2968975 GGCAGGGCCATCTTTGGGATGTCCAGTGGATTCCAAGCCGACATGATGATGCGACGGTCT 2969034 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 ||||| ||||||||| ||| | | | ||||||| || | |||| | || | Sbjct 2969035 GAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATCCCCTTGCCGCTG 2969094 Query 30139 TAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 ||||| | | || || | ||||| || |||||||||||||| ||||| |||||||| Sbjct 2969095 TAGTCGTCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCTCCATTGGAAGCCGTACAC 2969153 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 ||| ||||| || || | | | | ||| ||| ||||||||| ||| |||||||| Sbjct 2969154 CGGCCCCAGATCCCCAACGGCTCGCCCCGTGAACCCCATCTTGTCCAGAAATTCTCTGGA 2969213 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | ||| | |||||||| | || |||| | ||| |||| || || || Sbjct 2969214 GCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCGTCCGTCTTGCC 2969273 Query 30318 TCTGACGAACCACAGCAGCTCCTC 30341 |||||||||||||||||||| Sbjct 2969274 CGCCACGAACCACAGCAGCTCCTC 2969297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608287349510