Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=23542271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || |||||||||| | ||| | | || ||| Sbjct 6282519 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCC 6282578 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||||||||| || || || || || || || || Sbjct 6282579 AACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATTCCCTCCTTGTCGTGG 6282638 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || | || || |||| | | || || | || || || | |||| || ||| Sbjct 6282639 ATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 6282698 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 6282699 CCAGTGAGGGTCTTCACAAAGATCTGCATG 6282728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 6278312 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 6278371 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 6278372 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 6278431 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || || | || | || || || | || || || | ||||| || ||| Sbjct 6278432 ATCTTTGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGATGGTCTTG 6278491 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 6278492 CCAGTGAGGGTCTTCACAAAGATCTGCATG 6278521 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || || || || || ||||| |||| | ||| | | Sbjct 6277393 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 6277452 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || || || ||||||||||| ||||| || || || || || || Sbjct 6277453 GTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 6277512 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || || | || | || || || | || || || | ||||| Sbjct 6277513 GTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTGAT 6277572 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | || || || || ||||||||| Sbjct 6277573 GGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6277609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || || || || || ||||| |||| | ||| | | Sbjct 6278077 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 6278136 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || || || ||||||||||| ||||| || || || || || || Sbjct 6278137 GTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 6278196 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || || | || | || || || | || || || | |||| Sbjct 6278197 GTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGAT 6278256 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | || || ||||| ||||||||| Sbjct 6278257 GGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCATG 6278293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396269368567590