Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq449 129 8e-25 >seq449 Length=25286936 Score = 129 bits (142), Expect = 8e-25 Identities = 193/271 (71%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||| ||||| || | ||||| || || ||||| || ||| | ||| || ||| || Sbjct 23892771 CAGGTCCTCATCAGTGAAGCCAGTTCCAATCTTGCATATGCTCTGATACTCCTCGTTTTC 23892712 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 || | || ||||| || || || | ||||||||||| |||| | ||| || || Sbjct 23892711 GGTGTCATAGCAGGCAAGCAAAAATCCTCCGTAGGTTCCAGTTCGCCGGCCCTTGCCTTT 23892652 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || || ||||||| ||| || | ||||| ||| || || ||| || ||| Sbjct 23892651 GTAGCCACCAATGACCACCAAATCGAGTGAGTCGCCCACA--TTGGATAGGTAGTCCTTC 23892594 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| |||||| | | ||||||||||||||||| ||||| || | | |||| Sbjct 23892593 TTCAATTTCAGCCAGTTGCGGGATCTCTTGGCAATCTCATAGGTGGCCTCCTCATCCAAT 23892534 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCT 197290 || |||| ||| | |||||||||| ||||| Sbjct 23892533 GTTTTGACCATGAGGCCCTCGCAAT-TTCCT 23892504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676713781445600