Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq448 143 2e-29 seq450 98.7 8e-16 seq1 87.8 1e-12 >seq448 Length=23513712 Score = 143 bits (158), Expect = 2e-29 Identities = 269/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTAC 9059 ||||| || || || ||| |||| ||||| | |||||| || | || ||| || Sbjct 11011913 CCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCC-TCCAGTTTGTCCACCATCAC 11011855 Query 9060 CAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCAC 9119 |||| ||||| ||||| | || ||||| || || || || | ||| || | ||||| Sbjct 11011854 CAGTTGCGGATAGAAGATACGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCAC 11011795 Query 9120 GACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTC 9179 | || || || || ||||||||||| || || || | || || | |||||||| Sbjct 11011794 CTCGAAATCAACATCTGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTC 11011735 Query 9180 ATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 || | |||||| || ||||| || ||||||| ||| ||||| || || || || || || Sbjct 11011734 GTCCACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGGC 11011675 Query 9240 GATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTT 9299 | || |||||| | ||| |||| | ||||| ||| |||||| |||| | |||| Sbjct 11011674 TACGCGTCCGTAGGAGCCCTCCGGAACCTGCACTTGCAGATCGGTCTTGACAATGGCCTT 11011615 Query 9300 GCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTC 9359 ||| || || | ||| ||||||| |||| || |||| || || || || | Sbjct 11011614 TCCGCGTGCCGGCACCACAACGTCGTAGGCGCTGCGCAGGTCAACTCCCGCCGCTTTGGC 11011555 Query 9360 CGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392 |||||| || ||| | ||||| || ||||| Sbjct 11011554 GGATCCCCTCACCGGCTCCAAAGCATTCTCGGT 11011522 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||| ||||| || || ||| | || Sbjct 4228242 AGGCGGAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGG 4228183 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 4228182 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 4228123 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || | ||||||||||| || Sbjct 4228122 TTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 4228063 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || || |||||||| Sbjct 4228062 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4228025 >seq450 Length=28110227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || || Sbjct 3899727 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3899786 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3899787 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3899846 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3899847 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3899906 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3899907 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3899935 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || || Sbjct 3899955 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900014 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3900015 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900074 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3900075 ATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTT 3900134 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3900135 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3900163 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || || Sbjct 3900183 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900242 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3900243 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900302 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3900303 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3900362 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3900363 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3900391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || || Sbjct 3900639 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900698 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3900699 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900758 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3900759 ATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTT 3900818 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3900819 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3900847 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || ||||| |||||||| || || | || | || || Sbjct 3900867 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3900926 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3900927 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3900986 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3900987 ATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTACCTCGAGGGTGATGGTCTTT 3901046 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3901047 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3901075 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || |||||||| || || | || | || || Sbjct 3901095 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTCA 3901154 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3901155 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3901214 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||| | || || || ||| Sbjct 3901215 ATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTACCTCGAGGGTGATGGTCTTT 3901274 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || |||||||| Sbjct 3901275 CCGGTCAAAGTCTTCACGAAGATCTGCAT 3901303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || || || |||||||| || || | || Sbjct 3899490 AGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 3899549 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| ||||| | ||||| |||||| Sbjct 3899550 CCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCC 3899609 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 3899610 TTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTG 3899669 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||| || || || |||||||| Sbjct 3899670 ATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3899707 >seq1 Length=23542271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || || || ||||| || || ||| | || Sbjct 6278075 AGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 6278134 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 6278135 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 6278194 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 6278195 TTGTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTG 6278254 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 6278255 ATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 6278292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || ||| || || || ||||| || || ||| | || Sbjct 6278303 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 6278362 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 6278363 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 6278422 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||||| || Sbjct 6278423 TTGTCCTGGATCTTTGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTG 6278482 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 6278483 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6278520 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || || || || || |||||||| || ||| | || Sbjct 6282510 AGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 6282569 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 6282570 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATTCCCTCC 6282629 Query 48669 TTGTCG 48674 |||||| Sbjct 6282630 TTGTCG 6282635 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || || || ||||| || || ||| | || Sbjct 6277391 AGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 6277450 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 6277451 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 6277510 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 6277511 TTGTCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAAGTG 6277570 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || || |||||||| Sbjct 6277571 ATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6277608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928918194010