Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq449 241 2e-58 seq448 217 3e-51 >seq449 Length=25286936 Score = 241 bits (266), Expect = 2e-58 Identities = 553/824 (67%), Gaps = 13/824 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| |||||||| | |||||||| ||||| ||||| || |||| ||| || |||| Sbjct 11983489 CTGGTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 11983548 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||||| ||||| || | | | | ||||| || | |||| Sbjct 11983549 CATGAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 11983608 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||| ||||| | ||||| ||| | |||||||| || | Sbjct 11983609 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATT 11983668 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | || || ||||||| ||| || ||| || || | | |||| Sbjct 11983669 GACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTC 11983728 Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133 | | ||| ||| | | || | | ||| | ||||| |||| | | || ||| | Sbjct 11983729 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTG-TTGGAACAT--CA-GCACG 11983780 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||||||||| ||||| || ||| ||| ||||||||||| | ||| Sbjct 11983781 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCA 11983840 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || ||||||||||| | ||||| ||| |||||||||| Sbjct 11983841 GGCATCAGACCTCGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATG 11983900 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || ||| ||| | || ||||| || ||| |||||| Sbjct 11983901 CCCTCCACGGCGGCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAGATC 11983960 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||||| || |||||||||||||| ||| | |||||||| || || || || Sbjct 11983961 CAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTAAAC 11984020 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | || | || || || | || || || || ||||||||| Sbjct 11984021 AGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCAAAACACTGTACATCTCC 11984080 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 |||||||| ||||| || |||||||| || ||||||||| | ||||| | |||| Sbjct 11984081 GAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTGATCTGC 11984140 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || ||| | ||||| ||| ||||| || || || || || || || || ||| Sbjct 11984141 ACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAG 11984200 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| || || | |||||||||||||| || | || | ||| | Sbjct 11984201 AAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCAGTA 11984260 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || || ||||||||||| || || Sbjct 11984261 AGGTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGC 11984304 >seq448 Length=23513712 Score = 217 bits (240), Expect = 3e-51 Identities = 974/1527 (64%), Gaps = 66/1527 (4%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| ||||||| | |||||| || || || || || | || ||| | ||||| ||| Sbjct 10325586 TGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTTGTGGTG 10325645 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| | || || || |||| ||||| || || || |||||||||||| Sbjct 10325646 TAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGCTGTAGATGCCGTGGGCATGGGA 10325705 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCC 213081 || || || ||| ||||| || |||||| | ||| | | || || |||||| Sbjct 10325706 GCAACAAGCAGAGAGTTCCGGACACCGTGCATCCTAATG-GACTCCTTCAATTTCTGCC- 10325763 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGCAA 213136 ||||||| ||||| |||| |||| || ||||||||| | ||||| Sbjct 10325764 AGTCCCA---------CAGGT--TCGTTGGCACCTT---GTCCCACATGTCGTATTGCAA 10325809 Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196 || || ||||| || |||||||||| ||| | ||| || || | || |||||| Sbjct 10325810 AATTCCCTTGCTTACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAG 10325869 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA---- 213252 |||||| || | || ||| | ||||| || ||||| ||||||| | || | Sbjct 10325870 TTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTCAAGAG 10325929 Query 213253 ----GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308 ||||||| || | | ||| ||| |||| | || || ||||||| Sbjct 10325930 ACCGGCTTCTTCGCTTTCGT--ACGGGAAACGCATGAGAATC------AAAGCATCAGCG 10325981 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC 213368 | ||||| | || ||||| | ||| | ||| |||| || || || ||| | Sbjct 10325982 AATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGC 10326041 Query 213369 AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA 213428 | || ||| ||||| || || |||||||| || || ||| | | |||||||| Sbjct 10326042 AGAGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACT 10326101 Query 213429 TGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488 | || | || | || | |||| | ||| | | |||||| ||||| Sbjct 10326102 TCCTTGAGCTTCTTGAAATC--ATACGTCTTCTCCGGCGTT-ACAAACATGTTGAGGGCA 10326158 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTG 213548 ||| ||||| |||||| || || | ||| | | | | ||| || | ||| || || Sbjct 10326159 ATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTA 10326218 Query 213549 CACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA 213608 |||| ||||||||| ||| ||||||| ||||| ||||| ||| |||| || Sbjct 10326219 CACAAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 10326278 Query 213609 TCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CC 213666 |||||| | |||||||| || |||||||| | || | | | | || ||| || Sbjct 10326279 TCCTTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGAT--GGCAAACC 10326336 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCG 213725 | ||| | ||||| ||| || || | ||| | | |||||| | ||| Sbjct 10326337 ACAGGGATTGAGCCTTAACCGTTCGGTTGGC----CCGACCCTCTTGCTCGTATTTCTCG 10326392 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACAC 213785 || |||| | |||||| | |||||| || || || || ||||| ||| ||| Sbjct 10326393 TACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGCAC 10326452 Query 213786 ATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 ||||| ||| || |||| | || | | |||||| || || || | |||||| Sbjct 10326453 ATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGG 10326512 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 ||| ||||| || | | | |||| || || | ||| || ||| || || Sbjct 10326513 GCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCAGG 10326572 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 || ||||||| |||| |||||| || |||| ||| ||||||||||| || || | |||| Sbjct 10326573 AACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCTTG 10326632 Query 213966 CCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022 ||| ||||| ||||| | ||||| | ||||| | | ||| | || |||| | Sbjct 10326633 CCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGGAACCAAC 10326692 Query 214023 CCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATG 214082 || || || ||| || || || || | | ||| || | | | | | | Sbjct 10326693 CCATTCGAAGTTCCATTTGTGCCGCAAATCGATGTGCCCTTTGCACGAATGCAGTGTACG 10326752 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 || || |||||||||||| ||||||||||||||||||| || ||||| || | Sbjct 10326753 TTAAGTCCAATGCCACCGGCGGACTTGGAGATCATGGCGCACTGCTCCACAGACTTGAAA 10326812 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 ||||| | ||| ||| |||| | | |||| | ||| || ||| | ||| |||| | Sbjct 10326813 ATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGG 10326872 Query 214203 GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAGAGAGG 214259 | | ||| | || || ||||| ||||| | | || | | | || || Sbjct 10326873 TTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG---CGTGAAGTAGCGCTCCGATAGA 10326929 Query 214260 AGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CT 214318 || | || || |||| | | | ||| || | ||||| | || ||| | Sbjct 10326930 AGATTATAAGTTTCCACGGCCGCATCGATATCCTCTCCATGGATTCCGATCGC-CACGCG 10326988 Query 214319 CATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGGTAGGAG 214376 ||||||||| ||||| || || || || | |||| | | |||||||| ||||| Sbjct 10326989 CATCAGCATATGCTGCGG--TCGCTCTGCGATCTTTCCGTTTCTTTTGAGCAGATAGGAA 10327046 Query 214377 CGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||||| |||||||| ||||| ||| Sbjct 10327047 CGCTCCAGGGTCTTGAAGCCAAAATAG 10327073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511025420800