Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq449 132 9e-26 seq448 131 3e-25 >seq449 Length=25286936 Score = 132 bits (146), Expect = 9e-26 Identities = 349/524 (67%), Gaps = 14/524 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | ||| ||| | ||| || |||||||| | | ||| || || | Sbjct 11984296 CTGGACTGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGA 11984237 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| ||||| || | ||||| | || ||||| || ||||| || || || || Sbjct 11984236 CGACGAGCGCCATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT 11984177 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||| ||| ||| | |||| ||| |||||| | |||||| || || Sbjct 11984176 AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGTTGCTT 11984117 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| || ||||| ||||| || || |||||||| ||| |||| || || |||| Sbjct 11984116 CTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTTTTGAT 11984060 Query 25752 GACGTACA-TTACAGACGT----CGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 || ||| ||||| ||| | | | || |||| |||||| || ||||| Sbjct 11984059 --CG-ACACTTACATCCGTGATCCACACCAGCGAGAGTACCTGTTTAACGCTATCGAAAC 11984003 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG- 25864 || || | ||| | ||||| |||||| || |||||| | ||| | || Sbjct 11984002 GATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCCT-CCAAATCGG 11983944 Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 | | || || || || | | |||||||| || |||||||||||||| |||||||| Sbjct 11983943 CCAACTTCGGGGAACGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCA 11983884 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 || || |||| |||||||| ||| || || ||||| || || ||| |||| Sbjct 11983883 GCTTCGCTTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCA 11983824 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCC 26028 ||||||| ||| | |||||||| | ||| | || |||||| Sbjct 11983823 ACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCC 11983780 >seq448 Length=23513712 Score = 131 bits (144), Expect = 3e-25 Identities = 339/515 (66%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 221690 ACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA 221749 ||||| ||| ||||||| | ||||| ||| || || || | ||| ||| || Sbjct 10326141 ACAAACATGTTGAGGGCAATGGAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAG 10326200 Query 221750 TACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTA 221809 || | || ||| || ||||| | ||||||||||||||| || |||| | | || || Sbjct 10326201 TATTCTACGATTTCCGTACACAAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTG 10326260 Query 221810 GACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCC 221869 ||| | ||| |||||||||| | ||||| | ||| || ||||||| || ||| Sbjct 10326261 CTCTTCCTGTTGCAAGCGTCCTTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCC 10326320 Query 221870 ACCAGAATCTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG 221926 | ||| || | ||| || | || | ||||| | ||| | |||||| Sbjct 10326321 TC---AATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCT 10326377 Query 221927 GTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCT 221986 || | | | || || ||| | || || | || || || | |||| || || Sbjct 10326378 TGCTCGTATTTCTCG---TACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCA 10326434 Query 221987 GGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAG 222046 |||||| || ||| ||||| || ||| | |||| | | || | | ||||||| Sbjct 10326435 GGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAG 10326494 Query 222047 AGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTG 222106 || || || |||||||| || | ||| ||||| | | || | ||| || ||| || Sbjct 10326495 AGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTG 10326554 Query 222107 TTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCC 222166 || ||| |||| |||| |||||||| | || | |||||| || ||||| || | ||| Sbjct 10326555 TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCA 10326614 Query 222167 AGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 | || ||||| |||||| ||| ||||||||||| Sbjct 10326615 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCAC 10326649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823088252800