Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq451 152 3e-31 seq448 120 2e-21 seq450 86.0 4e-11 >seq451 Length=32079331 Score = 152 bits (168), Expect = 3e-31 Identities = 368/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 15244379 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 15244438 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 15244439 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 15244498 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || |||||||| || || | || | || || || | || | Sbjct 15244499 CGGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 15244558 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||| || || |||||| || | || || ||||| | Sbjct 15244559 TCTTCGACGCCAAGCGCTTGATTGGTCGCAAGTTCGATGATGCCGCCGTGCAGTCTGACA 15244618 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 15244619 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 15244678 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || ||||| ||||| | |||| Sbjct 15244679 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCTTCGATGGTGCTTACCAA 15244736 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || | || || || || Sbjct 15244737 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCGGTCATCACC 15244794 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || || || || | || || Sbjct 15244795 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGCACCATCGCC 15244854 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | ||||| || || || || || || || || | ||||| ||||| Sbjct 15244855 GGTCTGAACGTGCTGCGTATCATCAACGAGCCCACTGCCGCTGCTATCGCTTACGGTCTG 15244914 Query 474869 GATAAGAA 474876 || ||||| Sbjct 15244915 GACAAGAA 15244922 >seq448 Length=23513712 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 10409909 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 10409850 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 10409849 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 10409790 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 10409789 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 10409734 >seq450 Length=28110227 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||| || ||||| || ||||||||||||||| Sbjct 3901605 TCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTG 3901664 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| ||||| || || | | | || ||||| || Sbjct 3901665 TCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGATG 3901724 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| | |||||| || || || || Sbjct 3901725 GTCTTTCCGGTCAAAGTCTTCACAAAGATCTG 3901756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268098986626760