Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq448 156 5e-33 >seq448 Length=23513712 Score = 156 bits (172), Expect = 5e-33 Identities = 636/989 (64%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGG 75666 ||| ||||||| ||||| | ||| || | |||||||| || | | || ||| ||| Sbjct 10326607 TACCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACAGG 10326549 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | |||||| ||| | ||||| |||| |||||||||| || || || ||||| Sbjct 10326548 CAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCAT 10326489 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 ||| || || |||| ||| | ||||| || | || || ||||| || ||||| Sbjct 10326488 GAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCT 10326429 Query 75787 CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 | ||||| | ||| || || || ||| || ||| || || || | |||||| | Sbjct 10326428 CCACGACGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCG 10326369 Query 75847 AGCCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACG 75904 ||||| || || || | || | ||| || || | | | || | Sbjct 10326368 GGCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTG 10326311 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| |||| || || ||||| | |||||| ||||| |||| |||||| ||||| || Sbjct 10326310 GAGACCGGAAATCCGTACATGCTGTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAG 10326251 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| |||| ||||||||| || || | || |||||||| |||| ||| | | | Sbjct 10326250 AATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGAAATCGTAGAATACTCCGCACCG 10326191 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||||| || || ||||| ||||| || || ||||| | || ||| | ||| Sbjct 10326190 GATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCCTCAACATGTTTGTAACGCCGGAG 10326131 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || | ||||| | || || | ||| |||| ||||| ||||||||||||||| Sbjct 10326130 AAG---ACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTA 10326074 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCC-CGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| | ||||| | || | |||||| | ||| || | || || ||| || | Sbjct 10326073 AACAAGATAATTGATATCAACTATTATCCTCTGCCAGA-GGCAAGGAAATCCAATTTGAG 10326015 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||| | || | || | ||| |||| || |||| |||| || ||| | || | Sbjct 10326014 GCACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCTTTGATTCTCATGCGTTT 10325955 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | | | || || |||||| ||||| | || || ||||| || || | Sbjct 10325954 CCCGTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACGATTTACTA 10325895 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | || |||| || || || ||| |||| | || ||||| | || || || | || Sbjct 10325894 TGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGA 10325835 Query 76384 GGGTTCTCCCGCGTCCCAAGGG-GTGCTTCAGTTTGATATGTGGG--AAGGTG-AAACCA 76439 ||| |||| |||||| | | || | || ||||||| |||||| ||| | Sbjct 10325834 GGG-CAGCCCGGTAAGCAAGGGAATTTTGCAATACGACATGTGGGACAAGGTGCCAACGA 10325776 Query 76440 AGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 | || | |||||| | | ||||| ||| | | | | ||| | || ||| Sbjct 10325775 ACCT---GTGGGACTGGCAGAAATTGAAGGAGTCCATTAGGATGCACGGTGTCCGGAACT 10325719 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 ||| | | || || ||||| || || || || || || || |||| |||||||||| Sbjct 10325718 CTCTGCTTGTTGCTCCCATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAAT 10325659 Query 76560 GCTTTGAACCATACACAACAAACATCTAC 76588 ||| || || ||||| |||||||| ||| Sbjct 10325658 CCTTCGAGCCCTACACCACAAACATATAC 10325630 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| ||| | | ||| |||||| | ||||| ||| |||| ||||||| Sbjct 19450088 AGCGCTCCATTCCTAGTCTGGTGGATGGCTTGAAGCCGGGTCAGCGGAAGGTGATGTTCA 19450029 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 |||||||| | | |||| |||| ||| |||||||||| || || | | || || | Sbjct 19450028 CTTGCTTCAAGAGGAATGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCCGGATCAGTGG 19449969 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGG 14519 |||| | ||| || || ||||| || || |||||| || | || || || || ||| Sbjct 19449968 CGGAGATGTCAGCCTATCACCACGGAGAGGTATCCCTACAGATGACAATCGTGAATCTGG 19449909 Query 14520 CAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTA 14579 | | | | |||| | ||||||||||| || ||||| || | ||||||||||||| Sbjct 19449908 CTCAGAATTTTGTGGGTGCCAACAACATTAATCTGCTTGAGCCACGCGGTCAATTTGGTA 19449849 Query 14580 CGCG 14583 | || Sbjct 19449848 CCCG 19449845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555655185600