Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 131 5e-25 seq451 89.7 2e-12 >seq1 Length=23542271 Score = 131 bits (144), Expect = 5e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| ||| Sbjct 11566722 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 11566781 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| ||||| | | ||| ||| || || Sbjct 11566782 TCGATAAGACCTTCACGACCACCCATAGCGTGGAAATAGAACTCAGAGGGTGTCAGGCCG 11566841 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | || |||| |||||||| |||| ||| || || ||| ||| ||||| Sbjct 11566842 GCAAGATACGAATTCTCCACGAAACCGCGCGACTCAGGACCATAATCGTCCTTAATAAAG 11566901 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || || || || | || | ||||| ||||| ||||| || || |||||||| || Sbjct 11566902 TGGGGAAGAGTGCGTTTGCGGAAACCGTAGGGGATTCGCTTACCCTCCACGTTCTGTTGA 11566961 Query 302815 CCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 11566962 CCCACACAAGCAATAACCTG 11566981 >seq451 Length=32079331 Score = 89.7 bits (98), Expect = 2e-12 Identities = 146/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || ||||| ||||| || || ||||| |||||| || ||| || Sbjct 14129087 ATTGTCATACGAGATGGGATAGCGTGGGGGTTAATAATGATATCGGGTGCCAATCCCTC- 14129029 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAA--TAATGTTTCCAATA-GTTCCCTTTTGTCC 251960 ||| ||||||| ||| |||| ||| | || || | | | |||||||||||||| Sbjct 14129028 GCATGTGAAGGCCATGTCCT---CCTGACGGTACTGGATGCCGCACGTTCCCTTTTGTCC 14128972 Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020 |||||||||| ||||||||| || || ||| || || || | |||| ||| Sbjct 14128971 GTGACGAGAAGCGAACTTATCGCCGATCTGCGGAATACGCACCGAGCGCACTCGAATCTT 14128912 Query 252021 ACAGAAGTTGTAACCATCACCGTTG 252045 ||||| ||||| || || | |||| Sbjct 14128911 GCAGAACTTGTAGCCCTCGCTGTTG 14128887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471782336170190