Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq449 123 3e-22 seq450 116 5e-20 seq1 109 7e-18 seq448 93.3 5e-13 >seq449 Length=25286936 Score = 123 bits (136), Expect = 3e-22 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||||| | |||||| || ||| | | ||||| ||| || Sbjct 12139695 AGAAGCGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCAGGGCA 12139636 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || |||||||||| || |||||||| | ||| || ||||||||| | Sbjct 12139635 CGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGGGTCTGCTCGACGTCA 12139576 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||||||||||||||| ||| || ||| | |||| Sbjct 12139575 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGCTATTCGCGACACCT 12139516 Query 1592286 T 1592286 | Sbjct 12139515 T 12139515 Score = 118 bits (130), Expect = 1e-20 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| ||||||||||| |||||||| ||| | |||| | | | Sbjct 11984079 CCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCGTAGAAGCAACGTGCCTCCGTGATCT 11984138 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | ||||||||||| |||||||||||| |||||||| Sbjct 11984139 GCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGA 11984198 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTC 869790 | || || || |||||| ||| || |||||||||||||| Sbjct 11984199 AGAAGGCAAGCACGTGCGAGATGAAATGGCGCTCGTCGTC 11984238 Score = 102 bits (112), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||||||| ||| | |||||| |||| | || ||||| || || Sbjct 11983793 TGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCT 11983852 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| || |||| ||| ||||| ||| ||||||||||| |||||| Sbjct 11983853 CGCTTCTTAAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG 11983912 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGT-GTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 |||||| |||||| || || | ||| | | ||| | | |||||| || Sbjct 11983913 GCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGA----TTTGGAGGAGATCCAGGACAG 11983968 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 |||||||| ||||| | |||| | ||||| ||| ||||| ||| ||| |||| Sbjct 11983969 GGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTAAACAGGT 11984024 Score = 96.9 bits (106), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||| ||||| | ||| |||||||||||||| || || ||||| |||| |||||| Sbjct 11983492 GTACTCCCCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCAT 11983551 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||| || |||||| |||| | || | | | |||||| || Sbjct 11983552 GAAGTTAAAGGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACG 11983611 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||| || || ||||| ||||||||| |||| ||| || |||||||| || | || Sbjct 11983612 GTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATCAAATTGAC 11983671 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| | | ||||| | ||| || | || || ||| |||||||| Sbjct 11983672 GGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT 11983727 >seq450 Length=28110227 Score = 116 bits (128), Expect = 5e-20 Identities = 235/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||| || | |||| ||||||||| | | ||| |||| Sbjct 4135767 GGGTCCTCCTGGCGTGGGCAAGACAACCACCATCCAGTGTCTGGCCAGGATTCTCCTGGG 4135708 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| || ||||| || || || || | || || || |||| || Sbjct 4135707 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4135648 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCC 1574073 || ||||| | |||||| || ||| | | ||| ||||||| || | | Sbjct 4135647 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAGAAGGT-GACACTGCCGCGGGGCAGGC 4135589 Query 1574074 ACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGC 1574133 ||||| | | || || |||||||| ||| || | ||| || ||||||||||| |||| Sbjct 4135588 ACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAGGGTGCCCAGCAGGCACTGC 4135529 Query 1574134 GGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGT 1574193 | |||||||| | ||| || ||| || || ||||||||||| |||||||| Sbjct 4135528 GCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGCG 4135469 Query 1574194 CGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||| ||| | |||| ||||||||||| || || || Sbjct 4135468 AGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATT 4135423 >seq1 Length=23542271 Score = 109 bits (120), Expect = 7e-18 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGAC--GTCGAGCAGCC 1592163 |||||||||| |||||||| | ||||| | || ||| | | ||||| ||| Sbjct 657342 AGAAGCGCACAGACGACATTATCTCATGGGAT--GCAGATTTCCTAAAAGTCGACCAGGG 657399 Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| || |||||| |||| | || || ||||| || ||||| ||| || || || || Sbjct 657400 CACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTAAGGGCCTTCTGGAGCT 657459 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 |||||| |||| || |||||||| ||||| ||| | |||||||| || |||||||| Sbjct 657460 CACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAAATACGCAAGAC 657519 Query 1592284 CTTTAACATCAAG 1592296 ||| ||||| ||| Sbjct 657520 CTTCAACATTAAG 657532 Score = 107 bits (118), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||| ||| | |||||||| | |||||| | ||| ||||||| || |||||| Sbjct 19816383 AAGCCCAC--ATGACATCTCAGCCTGGGACGCCAACTTTATTAACGTCGATCAACCCACC 19816440 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 | || || | || || ||||||||||| || || |||||| || | ||||| | Sbjct 19816441 TTGTTCGAAATCATACTGGCCGCCAACTATCTGGAGATCAAGGGCCTAGTGGATCTCTGT 19816500 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | |||||||| ||||| | ||| ||| | ||||||||||||||| | || || Sbjct 19816501 TGCAAGACGGTGGCCAATATGATTAGGGGAAAGACTCCCGAGGAGATCCGCCACACGTTC 19816560 Query 1592288 AACATC 1592293 |||||| Sbjct 19816561 AACATC 19816566 Score = 89.7 bits (98), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||| ||| | |||||||| || |||||| | ||| ||||||| || |||| | Sbjct 19813046 AAGCCCAC--ATGACATCTCACCCTGGGACGCCAACTTTATTAACGTCGATCAACCCATC 19813103 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 | || || | | | ||||||||||| || || || ||| || ||||| | Sbjct 19813104 TTGTTCGAAATTACAGTGGCCGCCAACTATCTGGAGATTAAGGGCCTAGAGGATCTCTGT 19813163 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||||| ||||| | ||| ||| | ||||||||||||||| |||| || Sbjct 19813164 TGCAAGACGTTGGCCAATATGATTAGGGGAAAGACTCCCGAGGAGATCCGCCAGACGTTC 19813223 Query 1592288 AACATC 1592293 |||||| Sbjct 19813224 AACATC 19813229 >seq448 Length=23513712 Score = 93.3 bits (102), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 || || | ||||||||| || || || | || |||| ||| ||||| || || Sbjct 10326447 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATC 10326506 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 ||||| |||||||| || ||||| || || ||||| || ||||| |||||| || || Sbjct 10326507 CACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGT 10326566 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 || || | || | | || | |||||| || |||||||| ||||||||| || Sbjct 10326567 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGA 10326626 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 10326627 CGCTTGCCGCCTCC 10326640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106985739042790