Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1 163 2e-35 >seq1 Length=23542271 Score = 163 bits (180), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||||| | |||| || |||||||||||||| || |||||||| || || || || Sbjct 15988618 TTGTGATCGAACAGCGTCTGGGCGCCCAGCTCGCAACCAAAGTACTTGGTTGGATAGGTG 15988677 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| | || | ||| | ||||||||| | || ||||| |||||| Sbjct 15988678 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTGACCAGCACGGTCTTAATGCCG 15988737 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || || || || |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 15988738 TTTCCTTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 15988795 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| |||| ||||||| ||||| || || ||||| || Sbjct 15988796 CCGTCACACTGCGGTTTACGTTTACGGTGGCCATCTTG 15988833 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34200 TGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTG 34259 || ||| ||||| |||| ||||| ||||| | ||||| | | ||| || || Sbjct 15988314 TGACGGGGGGTTCTTCACAATGAATGTGTTCACTTTATGGTTAACCTTGAGCAGACCATG 15988373 Query 34260 ATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTC 34319 | |||||||| ||||| ||| | || | | ||||| || ||||| | | | Sbjct 15988374 GAAGCCGCATGCCTTGCAAGACTGCGAAATGGTCTGGTTTTTGGCCGACACAGTTAAATT 15988433 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 |||||||| ||||| || || || || |||||||||||||| || |||||||| | || Sbjct 15988434 GGTCTCCGGATTGTCGCACTCGGGGCATAACACAAACTTGCGAATAAAACCATCCAACAA 15988493 Query 34380 GTCCTGTAACTT 34391 ||||| ||||| Sbjct 15988494 ATCCTGCAACTT 15988505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832191081910