Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq448 86.0 5e-12 seq450 84.2 2e-11 >seq448 Length=23513712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || ||||| ||||| ||| | || |||| || Sbjct 4228025 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4228084 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| ||||| || ||| | ||| |||||| Sbjct 4228085 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4228144 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || || | ||||||||| Sbjct 4228145 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4228204 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || ||||| ||||| Sbjct 4228205 ATTCAGAAGGAGTCCACCCTGCACTTGGTG 4228234 >seq450 Length=28110227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || |||||||| || ||||| ||||||||||| || | || ||| ||||||| ||| || Sbjct 11112797 GGTCTGCACGGATTCCACGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCC 11112738 Query 105141 GGCGAGCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAA-AGGC 105198 || ||||||||| || || | || | | || |||||||| | || || |||| | | Sbjct 11112737 GGACCGCACTTCAATCCGTATG-GCAAGGAGCATGGCGCTCCCGTCGACG-AGAATCGTC 11112680 Query 105199 ACGTCGGCGACCTGGGCAA 105217 || | ||||| |||||||| Sbjct 11112679 ACCTGGGCGATCTGGGCAA 11112661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867709348430