Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq448 140 2e-28 seq450 116 3e-21 >seq448 Length=23513712 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || | ||||| || || ||||||||||| || | | |||||| | Sbjct 10409945 CGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 10409886 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| | |||||||| || ||||| || |||||| Sbjct 10409885 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 10409826 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | ||| || || |||| || |||||||| || Sbjct 10409825 TCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGAT 10409767 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| ||||| || |||||||| || Sbjct 10409766 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10409728 >seq450 Length=28110227 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| || || |||||||| ||||| | | |||||| Sbjct 3901544 ACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTGCGTCC 3901603 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| ||||| || | |||| | |||||||| || ||||| || || || Sbjct 3901604 GTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTT 3901663 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | ||||| || | ||||| || || || || Sbjct 3901664 GTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACCTCGAGGGTGAT 3901723 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || ||||| ||||||||||| Sbjct 3901724 GGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATTTT 3901762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210420613670