Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq451 102 6e-16 seq450 98.7 7e-15 seq1 89.7 4e-12 >seq451 Length=32079331 Score = 102 bits (112), Expect = 6e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| || || || || || || || || | ||| || || | || | || | || Sbjct 15244584 ACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTT 15244525 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| |||||||| |||||| | || || || || || | |||||| |||||||| || || Sbjct 15244524 GGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACG 15244465 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 |||||| || || || || || || || || || |||| || | || || || || Sbjct 15244464 ATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGA 15244405 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | || || || ||||||||||||| |||| Sbjct 15244404 GTAGGTGGTGCCCAAATCAATACCAACAGCA 15244374 >seq450 Length=28110227 Score = 98.7 bits (108), Expect = 7e-15 Identities = 272/416 (65%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 13977180 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAACGTTACCTCCACCTGGGGCACT 13977121 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||| ||||| || | | | ||| | ||||| | || |||||| Sbjct 13977120 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCTCGC 13977061 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || || |||||||| | |||||| || | | || || || | |||| Sbjct 13977060 GTCATCGCCCGCTCGCCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13977001 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || ||||| | | | || || || || || ||||| || | ||| | | ||| Sbjct 13977000 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGCGTAGTC 13976941 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | || ||||| || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 13976940 ATCACTCCGCCAGCAGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13976881 Query 281726 TTTTGAAGTTTTTCATCAGTTTGA---CCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | | | || | || | ||| || || || || || | ||||||||| Sbjct 13976880 TCCTGCA---CTGCCTCCGATTTATCGCCATGGAGGATGGCCGCCTGCACTGCAGCACCA 13976824 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 || ||||| || ||||| ||||| | | | ||||||| || || |||||||| Sbjct 13976823 TAGGCAACCGCCTCATCGGGATTGATGGACTTGTTTAGTTCCTTGCCGTTGAAAAA 13976768 >seq1 Length=23542271 Score = 89.7 bits (98), Expect = 4e-12 Identities = 221/333 (66%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| || || ||||||||||| | ||||| || || || || | ||| Sbjct 11803801 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11803860 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | ||| | || | | || || | ||||| ||| || || |||| ||| || | Sbjct 11803861 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11803920 Query 282307 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 ||| || ||| ||| | | | || || || ||||| || |||| ||| |||||||| Sbjct 11803921 AAGCACGTTC--TTC-TCCCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11803977 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||||| || || || | || || | ||||| ||||| || ||||| || ||||| Sbjct 11803978 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATAACACCAGCATCCTTGGTGGC 11804037 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 || | || | |||||| || || || || || |||| ||||||| || || | || Sbjct 11804038 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11804097 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || | |||||| || |||| ||||| || Sbjct 11804098 GCCCAGATAAGCTTCAGCGGTTTCCTTCATCTT 11804130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740538590902620