Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq448 122 9e-23 seq450 95.1 1e-14 >seq448 Length=23513712 Score = 122 bits (134), Expect = 9e-23 Identities = 534/835 (64%), Gaps = 34/835 (4%) Strand=Plus/Plus Query 150995 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 151054 ||||||||| | ||||| || | || ||| || | ||||| || || | |||| Sbjct 10325865 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGATTC 10325924 Query 151055 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 151114 || ||| |||| | ||||| ||||||| | |||| | || || ||||| || || Sbjct 10325925 AAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAAGCATCAGCGAAT 10325984 Query 151115 CCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 151174 || ||||| || ||||| | |||||| || | || ||| ||||| |||| | | | Sbjct 10325985 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGATTTCCTTGCCTCTGGCAGA 10326044 Query 151175 GGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACTAC-ATGTT--TGACCACA 151231 || || | ||| |||||| || || || | | | || || || || |||| | Sbjct 10326045 GGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCC 10326104 Query 151232 GTGTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAATC 151288 || || | |||||| ||| | || | | | | | | | |||| |||||| Sbjct 10326105 TTGAGC--TTCTTGAAA-TCATACGTCTTCTCCGGCGTTACAAACATGTTGAGGGCAATG 10326161 Query 151289 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 151348 || || | || || || || | || || || ||| | |||| ||| ||||||| |||| Sbjct 10326162 GAGGCCAAGTTGCAGACTGCTATCTCATCCGGTGCGGAGTATTCTACGATTTCCGTACAC 10326221 Query 151349 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 151408 || |||||||| || || || ||| || ||||| || | ||||||||||||| Sbjct 10326222 AAGTTGCTGCACTTGATTGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10326281 Query 151409 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG-------TTTCG 151461 ||| | | ||||||||| | ||||| || |||| || || ||| | Sbjct 10326282 TTGAACAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 10326341 Query 151462 CATTAA--TGTAACCG--CGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCATAATGTT 151517 ||| | |||||| ||| || || || || ||| | | ||| || | | Sbjct 10326342 GATTGAGCCTTAACCGTTCGG---TTGGCCCG----AC---CCTCT-TGCTCGTATTTCT 10326390 Query 151518 TGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGAC 151577 |||| | ||| || ||||| || || |||| ||| |||||||| || || | Sbjct 10326391 CGTACAGCTTTTCGAATTCATCGCCCCACACGTCGTGGAGACCAGGACACTTGTGGGGGC 10326450 Query 151578 ACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATA 151637 |||| | ||||| |||||| | || ||||||||||| || | ||| || | ||| | Sbjct 10326451 ACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACA 10326510 Query 151638 ATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTA 151697 |||| | || ||| || || | ||||| |||| |||| || | | Sbjct 10326511 GGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCTGTGTTCTTCTTCAGTTCCA 10326570 Query 151698 AAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCT 151757 | || | | || | ||||| ||||| | ||| | || ||| || |||| Sbjct 10326571 GGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGGTAAATGGCAAAGGCACCGGGACGCT 10326630 Query 151758 TGCCACCT---TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGG 151809 |||| ||| |||||||| | ||| ||| |||||| ||||| | ||||||||| Sbjct 10326631 TGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAAACCCTCAGCATTGG 10326685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 10409885 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 10409826 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || ||| | | ||| | || || | ||||| || |||| ||| | Sbjct 10409825 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 10409766 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || | || || ||||| || ||||| Sbjct 10409765 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10409731 >seq450 Length=28110227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || || |||| || ||||| || || |||||||||||| | Sbjct 3899481 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 3899540 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899541 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3899599 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | ||| ||||| Sbjct 3899600 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTAC 3899659 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3899660 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3899708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901533 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3901592 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| ||||| || || || |||||||||| |||||||| || || Sbjct 3901593 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 3901652 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | ||||| | ||| ||||| Sbjct 3901653 ATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTACC 3901712 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| |||||||| || || || || || ||||| Sbjct 3901713 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 3901759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900849 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 3900908 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || ||||| |||||||||| |||||||| || || Sbjct 3900909 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 3900967 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3900968 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3901027 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901028 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901305 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901364 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || ||||| |||||||||| |||||||| || || Sbjct 3901365 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 3901423 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || ||| || || | | || | ||||| | || ||||| Sbjct 3901424 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3901483 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901484 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901532 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3899709 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899768 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899769 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3899827 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3899828 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3899887 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3899888 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3899936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3899937 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3899996 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3899997 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900055 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3900056 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3900115 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900116 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900164 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900165 CCACCACGAAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900224 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900225 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900283 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3900284 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAAGGCTCTAC 3900343 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900344 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900392 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900393 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900452 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900453 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900511 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || ||| || || | | || | ||||| | || ||||| Sbjct 3900512 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCTAC 3900571 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900572 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900620 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3900621 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3900680 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3900681 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3900739 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3900740 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3900799 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3900800 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3900848 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3901077 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 3901136 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3901137 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3901195 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||||| | || ||||| Sbjct 3901196 AATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATTGTGTCCGATGGCTCTAC 3901255 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 3901256 CTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3901304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488532580284000