Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq448 154 3e-32 seq450 150 4e-31 seq1 140 6e-28 seq449 107 4e-18 >seq448 Length=23513712 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || ||||||| ||| || || ||||| || ||||| ||||| Sbjct 10409958 ACCACCACGCAGGCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 10409899 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 10409898 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10409839 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| ||||| || Sbjct 10409838 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 10409779 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 10409778 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10409731 >seq450 Length=28110227 Score = 150 bits (166), Expect = 4e-31 Identities = 180/243 (74%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || || ||||| || || ||||| | Sbjct 3901531 TACCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGG 3901590 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| ||||| || || || ||||| || | || |||||||| | Sbjct 3901591 ACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 3901650 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || ||||| ||||| || || || |||| Sbjct 3901651 GAATTCCTTCCTTGTCTTGGATCTTAGCCTTAACATTCTCAATGGTGTCCGAGGGCTCTA 3901710 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | || | || || ||||| || ||||| ||||| ||||| ||||||||| || ||| | Sbjct 3901711 CCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATT-TTGGATTAT 3901769 Query 82822 TCT 82824 ||| Sbjct 3901770 TCT 3901772 >seq1 Length=23542271 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| || || ||||| ||||| || || ||||| || Sbjct 6282501 CCACCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 6282560 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || | || ||||| || ||||| | | ||||||||||| || Sbjct 6282561 AGAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 6282620 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || ||| | || || || |||||||| |||| || || || Sbjct 6282621 ATTCCCTCCTTGTCGTGGATCCTGGCCTTAACGTTTTCAATGCTATCGGATGGCTCGACC 6282680 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 6282681 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6282727 >seq449 Length=25286936 Score = 107 bits (118), Expect = 4e-18 Identities = 188/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 198331 ATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTT 198390 ||||| || ||||| | ||||| | ||| || || | || ||||| ||||| | | Sbjct 7826944 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT 7827003 Query 198391 TTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTT 198450 |||| | ||||||||||| |||||||| || ||||||||| |||||||| | || | Sbjct 7827004 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCGT 7827063 Query 198451 TGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGAT 198510 || || ||| || ||| | |||||| || || || || || ||||| | Sbjct 7827064 TGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCT 7827123 Query 198511 ACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTA 198570 | || || || |||||||| ||| |||| | ||||| | ||||| || | ||| Sbjct 7827124 ATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTA 7827183 Query 198571 TATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | || || ||| | || || ||||| ||| |||| Sbjct 7827184 TCTTCGGTAAGGTTAGGTACATGAACTATCAGGG 7827217 Score = 107 bits (118), Expect = 4e-18 Identities = 188/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 198331 ATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTT 198390 ||||| || ||||| | ||||| | ||| || || | || ||||| ||||| | | Sbjct 7830054 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT 7830113 Query 198391 TTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTT 198450 |||| | ||||||||||| |||||||| || ||||||||| |||||||| | || | Sbjct 7830114 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCGT 7830173 Query 198451 TGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGAT 198510 || || ||| || ||| | |||||| || || || || || ||||| | Sbjct 7830174 TGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCT 7830233 Query 198511 ACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTA 198570 | || || || |||||||| ||| |||| | ||||| | ||||| || | ||| Sbjct 7830234 ATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTA 7830293 Query 198571 TATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | || || ||| | || || ||||| ||| |||| Sbjct 7830294 TCTTCGGTAAGGTTAGGTACATGAACTATCAGGG 7830327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981803676033930