Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq449 104 4e-17 >seq449 Length=25286936 Score = 104 bits (114), Expect = 4e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 183014 ATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTT 183073 ||||| || ||||| | | ||| | ||| || | | || ||||| ||||| | | Sbjct 7826944 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT 7827003 Query 183074 TTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTT 183133 |||| || ||||||||||| |||||||| || ||||||||| || ||||| |||| | Sbjct 7827004 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCGT 7827063 Query 183134 TGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGAT 183193 || || ||| ||||| | |||||| || || ||| || || ||||| | Sbjct 7827064 TGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCT 7827123 Query 183194 ACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTA 183253 | || || || |||||||| ||| |||| | || || | | ||||| || | ||| Sbjct 7827124 ATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTA 7827183 Query 183254 TATTTGGAAAGATAAGATATATGAATTATGAG 183285 | || || ||| | || || ||||| ||| || Sbjct 7827184 TCTTCGGTAAGGTTAGGTACATGAACTATCAG 7827215 Score = 104 bits (114), Expect = 4e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 183014 ATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTT 183073 ||||| || ||||| | | ||| | ||| || | | || ||||| ||||| | | Sbjct 7830054 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCT 7830113 Query 183074 TTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTT 183133 |||| || ||||||||||| |||||||| || ||||||||| || ||||| |||| | Sbjct 7830114 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCGT 7830173 Query 183134 TGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGAT 183193 || || ||| ||||| | |||||| || || ||| || || ||||| | Sbjct 7830174 TGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCT 7830233 Query 183194 ACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTA 183253 | || || || |||||||| ||| |||| | || || | | ||||| || | ||| Sbjct 7830234 ATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCGGGCTA 7830293 Query 183254 TATTTGGAAAGATAAGATATATGAATTATGAG 183285 | || || ||| | || || ||||| ||| || Sbjct 7830294 TCTTCGGTAAGGTTAGGTACATGAACTATCAG 7830325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903390082763200