Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20melanogaster_20[refseq_20GCF_5F000001215.4_202014-08- 01] 1,870 sequences; 143,726,002 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq453 87.8 4e-12 seq448 86.0 1e-11 >seq453 Length=3667352 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | | |||| ||||| |||||||| | |||| ||||||||||| ||||||| ||||| Sbjct 3539746 CATCATAGCACCTGCATTGTCGAATTC-TCCGCAGTAATTTGGTGCAGAAAATATAGTAA 3539804 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || || || || ||| || || |||||||| |||||||| | ||| ||||| Sbjct 3539805 TTAGTTGTCGCTTTGCAAAGAACTCGTAACCATCCTCAACAACCTGATGTGCACG 3539859 >seq448 Length=23513712 Score = 86.0 bits (94), Expect = 1e-11 Identities = 218/331 (66%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 |||| | ||| | ||||||||| | || || ||||| | ||| |||||| ||| Sbjct 10326702 CTTCGAATGGGTTGGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACGTTATGTGGATC 10326643 Query 110734 A---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 | ||| || ||| | || | ||||| || || || ||||| ||||| || ||| Sbjct 10326642 AGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCCTGGCACTCGGATG 10326583 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | ||||| ||| | ||||| || || ||| ||||| | | ||||| ||| Sbjct 10326582 TCTTTGAGTTCCTGGAACTGAAGAAGAACACAGGCAAAGAAGAGAATCGCGCACGCGATC 10326523 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGT 110910 | ||||| || ||||||| | ||| | ||||||||||| || | | || || | Sbjct 10326522 TGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATT 10326463 Query 110911 GGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTG 110970 |||| || ||||| || || | ||||||||| || || | || | || || | Sbjct 10326462 GGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCCACGACGTGTGGGGCGATGAATTCG 10326403 Query 110971 AAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || | || ||||| ||||| || |||| || Sbjct 10326402 AAAAGCTGTACGAGAAATACGAGCAAGAGGG 10326372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186784364707070